Factsheet for HORVU2Hr1G019880.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G019920.1	Barley	cytosol	75.28	72.46
TraesCS2B01G133900.1	Wheat	plastid	76.11	50.93
EER99880	Sorghum	cytosol	67.5	50.84
TraesCS2A01G114800.1	Wheat	plastid	75.56	50.56
TraesCS2D01G115600.1	Wheat	cytosol, plastid	76.39	47.01
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	65.56	43.95
Os07t0671200-00	Rice	extracellular	65.56	42.83
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	63.33	42.46
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	60.28	41.65
GSMUA_Achr11P...	Banana	cytosol	51.39	37.68
PGSC0003DMT400027103	Potato	cytosol	35.28	31.05
KRH33556	Soybean	cytosol	17.78	30.62
VIT_08s0040g01530.t01	Wine grape	cytosol	45.28	26.29
Solyc10g084080.1.1	Tomato	cytosol, extracellular	36.67	25.73
CDX79463	Canola	plastid	38.33	22.37
CDX84733	Canola	plastid	37.78	22.15
Bra022891.1-P	Field mustard	plastid	37.78	22.15
AT2G32630.1	Thale cress	mitochondrion, plastid	38.33	22.12
KRG90304	Soybean	cytosol	33.33	21.39
HORVU3Hr1G086290.19	Barley	plastid	21.67	19.16
HORVU2Hr1G082620.1	Barley	plastid	22.78	16.21
PGSC0003DMT400027113	Potato	cytosol, plastid	42.5	15.15
KRG93154	Soybean	plastid	39.72	14.97
HORVU0Hr1G013090.3	Barley	cytosol, plastid	23.61	14.68
HORVU1Hr1G042440.2	Barley	mitochondrion	23.06	14.49
HORVU5Hr1G066340.2	Barley	mitochondrion	23.61	13.71
HORVU7Hr1G023200.23	Barley	cytosol	26.11	13.54
HORVU2Hr1G080860.1	Barley	plastid	23.33	13.29
HORVU4Hr1G074200.9	Barley	mitochondrion	24.72	13.05
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	24.72	12.88
HORVU7Hr1G028150.1	Barley	mitochondrion	18.06	12.87
HORVU5Hr1G042300.1	Barley	plastid	23.61	11.92
HORVU4Hr1G070310.1	Barley	plastid	26.11	11.24
Solyc10g084090.1.1	Tomato	cytosol	41.67	11.22
HORVU2Hr1G046710.2	Barley	cytosol, plastid	23.33	10.85
HORVU6Hr1G087430.7	Barley	cytosol	18.06	10.53
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	6.39	10.5
PGSC0003DMT400027098	Potato	cytosol	17.5	10.19
HORVU5Hr1G009510.3	Barley	cytosol	15.56	9.49
AT2G28050.1	Thale cress	cytosol, plastid	11.67	9.09
HORVU1Hr1G093590.2	Barley	cytosol	5.83	8.82
Solyc06g010270.1.1	Tomato	mitochondrion	11.11	8.64
PGSC0003DMT400040701	Potato	mitochondrion	13.06	8.55
HORVU2Hr1G080360.2	Barley	mitochondrion	11.11	7.81

Protein Annotations

Gene3D:1.25.40.10	Gene3D:2.40.70.10	MapMan:35.1	UniProt:A0A287H9P5	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU2Hr1G019880	EnsemblPlants:HORVU2Hr1G019880.2	InterPro:IPR002885	InterPro:IPR011990
InterPro:IPR021109	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418
InterPro:Pentatricopeptide_repeat	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B47E7F2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:52334831..52335931

Molecular Weight (calculated)

36329.3 Da

IEP (calculated)

6.178

GRAVY (calculated)

-0.040

Length

360 amino acids

Sequence
(BLAST)

001: VRTALCDLGA GVSVMPLSLF RRLELDKLTP TEISLQMADK STAFPIVVCE DVPVVVSNTT ILTDFVIXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XINGFCKIGQ IEAAEMLLTD MQLRGVGHNQ IIFNTMIDGY CRHGMVDKAL EIKAVMERMG IQLDVYTYNT LACGLCRVNR MEDAKKLLHI MTENGVESNY
201: VSYTTLISIH SKEGDMVEAR RLFRDMEGKG SRPSVVTYNV MIDGYIKSGS IREAERFKKE MEKKGLVPDV YTYAALVHGH CVNGKVDVAL RLFEEMKQRG
301: AKPNVVAYTA LISGLAKEGR SEEAFQFYDN MLAAGLTPDD TLYSMLVGSL HTDKRKDEIP

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.