Factsheet for Solyc06g010270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040701	Potato	mitochondrion	91.79	77.27
AT2G28050.1	Thale cress	cytosol, plastid	32.61	32.68
GSMUA_Achr11P...	Banana	cytosol	21.38	20.16
EER99880	Sorghum	cytosol	17.93	17.36
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	19.65	16.95
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	19.65	16.95
Os07t0671200-00	Rice	extracellular	19.65	16.52
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	18.57	16.51
TraesCS2B01G133900.1	Wheat	plastid	19.01	16.36
TraesCS2A01G114800.1	Wheat	plastid	18.57	15.99
HORVU2Hr1G019920.1	Barley	cytosol	12.53	15.51
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	17.49	15.28
Solyc01g109060.2.1	Tomato	mitochondrion	20.3	15.21
Solyc01g100450.1.1	Tomato	mitochondrion	19.65	15.04
TraesCS2D01G115600.1	Wheat	cytosol, plastid	18.57	14.7
Solyc10g084080.1.1	Tomato	cytosol, extracellular	16.2	14.62
Solyc04g050550.1.1	Tomato	cytosol	17.49	13.78
Solyc11g011410.1.1	Tomato	cytosol	13.82	13.33
Solyc03g007390.2.1	Tomato	plastid	17.28	12.6
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	20.52	12.52
Solyc01g111470.2.1	Tomato	plastid	19.87	12.37
Solyc05g008560.1.1	Tomato	mitochondrion	18.36	11.27
HORVU2Hr1G019880.2	Barley	cytosol	8.64	11.11
Solyc02g068890.2.1	Tomato	mitochondrion	17.06	11.03
Solyc01g108410.1.1	Tomato	mitochondrion	17.49	10.56
Solyc10g084090.1.1	Tomato	cytosol	27.65	9.57
Solyc06g069700.2.1	Tomato	plastid	15.55	8.93

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0090617	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4C453	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR44149	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:Solyc06g010270.1	EnsemblPlants:Solyc06g010270.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002767266	:

Description

No Description!

Coordinates

chr6:+:5746015..5747680

Molecular Weight (calculated)

53096.5 Da

IEP (calculated)

9.052

GRAVY (calculated)

0.050

Length

463 amino acids

Sequence
(BLAST)

001: MSVKKVLQNL RTLKKWQIPN PHLHHRAKIA DTIINAVLNP IVIAPSTLLS NLTPNLIHLI LSDPHINTPK CLHFFNFLLL NQSFITFKIG VETHLTLACR
101: LVKEGYFEYA ETLLVLVPNI ETFRFPFAVV ASFFEKHNVQ SKFASKIFNL LLKALSDNAK FNQALEIFMY MKLNAIEINK RTCIQVSIFS LTVVVDGLCR
201: RGEIKKAGEL VEEMLSKGVK PNIITCNTLV DACARRWNFE EMNYTLALMK RERVDLNVET YKFLVDGFLS SGKIDDAERL ILEMYVKGFK VDIHLYNLMI
301: KGYCRLGNME RVSAAKELVD KMLGQGVKLD GSMLDILIYF YFKAGMIEEA VSVLRLMEKR ELIADTSMYE LIIDGLLKLD RTEEAISWLT PLIKRGVSRQ
401: KLATIPLVDY LRNSVSEKLV HKRKENENNF KTTFYSDTIS LRHEDAHSAE MTNVSAVINE YIK

Best Arabidopsis Sequence Match ( AT2G28050.1 )
(BLAST)

001: MTPQCFLKTL KTAKQTYTFS IYKLLLNSSS INQTLASPET PLSDLNLSTL RRILSDPDIK SWKCISLFNF ILENPSLFSF QPDLRTHLSL TFRVLSERRF
101: SYAKELLKPV AIDDILRYPF NVIVSSVIDE CGCEKKVVGR FFNSMIMVYS DNGKFSEVVE VFEYMKNNEV KIDEKTCTLH LLNLKRCDQM ELARDFFSLM
201: VESGIDVVTV YSLTVVVTVL CCNGEITRAR ELVEEMGLVK GVKANIVTFK SMIGCCVKRW DFEELDLVLK LMEKESVMLD LDSYKVLIDG FTSYGKVEEA
301: ERLVLMMHDK KLRVESYLYN LIMNGYSRFG LVEKVIELYS EMSSRGVTPN KDTYWVLMNG LCKAGKVCEA MSFLNELRVN EFEIDEEMYS TLSEECYRVG
401: MIDKSLEVVA EMIRDGFIPG ATICERLADS LFEVNRKEAQ MLITIVVKCG IKPKSCSQYG LK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g28050 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.