Factsheet for Solyc07g047620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015722	Potato	cytosol	94.72	94.72
VIT_12s0057g00740.t01	Wine grape	mitochondrion	62.08	62.08
AT4G26680.1	Thale cress	mitochondrion	57.92	58.93
KRH44246	Soybean	cytosol	50.75	53.91
CDX94298	Canola	mitochondrion	57.55	53.6
GSMUA_Achr1P12600_001	Banana	extracellular	34.53	52.44
CDX94295	Canola	cytosol	16.79	50.28
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	17.36	42.01
HORVU1Hr1G093590.2	Barley	cytosol	18.49	41.18
Zm00001d030479_P001	Maize	plastid	36.04	37.9
TraesCS2D01G324100.1	Wheat	plastid	35.66	37.65
TraesCS2B01G343000.1	Wheat	cytosol, plastid	35.66	37.65
Os10t0363500-00	Rice	endoplasmic reticulum	35.66	36.91
HORVU2Hr1G080360.2	Barley	mitochondrion	35.47	36.72
TraesCS2A01G339000.1	Wheat	cytosol	36.6	35.34
Solyc11g011410.1.1	Tomato	cytosol	22.26	24.58
Bra026410.1-P	Field mustard	mitochondrion	57.74	23.2
Solyc04g050550.1.1	Tomato	cytosol	25.66	23.13
CDX89313	Canola	mitochondrion	57.36	22.47
Solyc01g100450.1.1	Tomato	mitochondrion	23.96	20.99
Solyc01g109060.2.1	Tomato	mitochondrion	24.34	20.87
Solyc03g007390.2.1	Tomato	plastid	24.34	20.32
Solyc01g108410.1.1	Tomato	mitochondrion	28.68	19.82
Solyc06g010270.1.1	Tomato	mitochondrion	15.28	17.49
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	24.72	17.26
Solyc10g084080.1.1	Tomato	cytosol, extracellular	16.04	16.57
Solyc01g111470.2.1	Tomato	plastid	22.26	15.86
Solyc05g008560.1.1	Tomato	mitochondrion	22.45	15.78
Solyc02g068890.2.1	Tomato	mitochondrion	20.75	15.36
Solyc06g069700.2.1	Tomato	plastid	20.0	13.15
Solyc10g084090.1.1	Tomato	cytosol	22.26	8.83

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CEW9
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF415	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc07g047620.1	EnsemblPlants:Solyc07g047620.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000276AC1E	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:58860622..58862214

Molecular Weight (calculated)

59763.1 Da

IEP (calculated)

9.767

GRAVY (calculated)

-0.155

Length

530 amino acids

Sequence
(BLAST)

001: MKILKQIRKF STFLDSTKNT HQVFVKSIAT KQSKLDPIPL PHRTISEPKG QDLDFVNVAH SHLVHSDWTK LENLSSGLTQ FRVKHILLKI QKDYVLSLEF
101: FKWVEVKSPN SNTLENHSIV LHVLTKSKKF KSAESILRKL LESGSVDFPG KLFEAILLSY RICDSSPRVF DSLFKCHAHL KKFRNASDTF CSMKQYGFVP
201: TVESCNAFMS ALLSSDRVDV ALAFYKEMRR SKISPNVYTF NMVVSALCKS GKLEKAVEVL REMENISLKP TAVSYNTLIA GHCNRDLLSV AMKLKTTMEM
301: NGIQPVNVTY NTLIHGLCKV GKLHEANKLF SEMKRTGVAP NVVTYNTLIN AYSQVGNSEM GSRLFEEMAN NGLKADILTY NALIMGLCKE MKTKKAALLV
401: KELDNANLVP NSSTFSYLIS GQCTRRNPDR AFQLYKSMVR GGFYPNKPTL TLLISTFIKN EDYDGAMEVL KEMLERSITP DVGMLTEICS MFLRCGRDGV
501: IIKLLQELEA KRLMPEGFDK TTVISSTDGR

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.