Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G084410.1 | Barley | cytosol, mitochondrion | 84.87 | 92.24 |
| HORVU2Hr1G080360.2 | Barley | mitochondrion | 84.45 | 39.26 |
| TraesCS2D01G324100.1 | Wheat | plastid | 78.57 | 37.25 |
| TraesCS2B01G343000.1 | Wheat | cytosol, plastid | 77.31 | 36.65 |
| TraesCS2A01G339000.1 | Wheat | cytosol | 77.31 | 33.52 |
| GSMUA_Achr1P12600_001 | Banana | extracellular | 43.28 | 29.51 |
| Os10t0363500-00 | Rice | endoplasmic reticulum | 63.45 | 29.49 |
| Zm00001d030479_P001 | Maize | plastid | 57.98 | 27.38 |
| CDX94295 | Canola | cytosol | 18.07 | 24.29 |
| KRH44246 | Soybean | cytosol | 40.76 | 19.44 |
| VIT_12s0057g00740.t01 | Wine grape | mitochondrion | 42.44 | 19.06 |
| PGSC0003DMT400015722 | Potato | cytosol | 41.6 | 18.68 |
| Solyc07g047620.1.1 | Tomato | cytosol, mitochondrion | 41.18 | 18.49 |
| AT4G26680.1 | Thale cress | mitochondrion | 38.24 | 17.47 |
| CDX94298 | Canola | mitochondrion | 39.08 | 16.34 |
| HORVU3Hr1G086290.19 | Barley | plastid | 27.31 | 15.97 |
| HORVU2Hr1G082620.1 | Barley | plastid | 27.73 | 13.04 |
| HORVU2Hr1G019920.1 | Barley | cytosol | 18.91 | 12.03 |
| HORVU7Hr1G028150.1 | Barley | mitochondrion | 24.79 | 11.68 |
| HORVU2Hr1G080860.1 | Barley | plastid | 30.67 | 11.55 |
| HORVU6Hr1G087430.7 | Barley | cytosol | 28.57 | 11.02 |
| HORVU7Hr1G023200.23 | Barley | cytosol | 30.67 | 10.52 |
| HORVU5Hr1G042300.1 | Barley | plastid | 29.83 | 9.96 |
| HORVU1Hr1G042440.2 | Barley | mitochondrion | 23.11 | 9.6 |
| HORVU0Hr1G013090.3 | Barley | cytosol, plastid | 23.11 | 9.5 |
| HORVU2Hr1G046710.2 | Barley | cytosol, plastid | 29.83 | 9.17 |
| HORVU5Hr1G009510.3 | Barley | cytosol | 22.69 | 9.15 |
| HORVU5Hr1G066340.2 | Barley | mitochondrion | 23.53 | 9.03 |
| HORVU4Hr1G074200.9 | Barley | mitochondrion | 23.53 | 8.21 |
| HORVU4Hr1G070310.1 | Barley | plastid | 28.15 | 8.01 |
| HORVU7Hr1G087760.14 | Barley | cytosol, mitochondrion | 21.85 | 7.53 |
| Bra026410.1-P | Field mustard | mitochondrion | 39.5 | 7.13 |
| CDX89313 | Canola | mitochondrion | 39.5 | 6.95 |
| HORVU2Hr1G019880.2 | Barley | cytosol | 8.82 | 5.83 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G093590.2 | EnsemblPlantsGene:HORVU1Hr1G093590 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1580 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | TIGRFAMs:TIGR00756 | UniParc:UPI000B465FBD |
| UniProt:A0A287GSK8 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:553498302..553499376
Molecular Weight (calculated)
26866.9 Da
IEP (calculated)
8.142
GRAVY (calculated)
-0.117
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGCSGLAS NGVGHDIDIS NSKIILITRY RAYLRAFCAL GRVADAAMVL DEMPDWGVHR TVVSFNTLIA AYCREHGGLE HALELKKRME LEVLTPSELT
101: YNTIIHGLCN EGRMRQANRL LSEMRAMRVV PNTVTYNTLI YGYFMHGDNG TALRVHEEMV KKGVELDTVT YNVLILGLCR DEKIKKAEHL FQQLDRPKLE
201: PNASTFSMLI LGHCKTQNSE RALQLLNVMK KIWLPSEL
101: YNTIIHGLCN EGRMRQANRL LSEMRAMRVV PNTVTYNTLI YGYFMHGDNG TALRVHEEMV KKGVELDTVT YNVLILGLCR DEKIKKAEHL FQQLDRPKLE
201: PNASTFSMLI LGHCKTQNSE RALQLLNVMK KIWLPSEL
001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.