Factsheet for PGSC0003DMT400015722

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	94.72	94.72
VIT_12s0057g00740.t01	Wine grape	mitochondrion	62.26	62.26
AT4G26680.1	Thale cress	mitochondrion	57.74	58.73
KRH44246	Soybean	cytosol	51.7	54.91
GSMUA_Achr1P12600_001	Banana	extracellular	35.09	53.3
CDX94298	Canola	mitochondrion	56.98	53.08
CDX94295	Canola	cytosol	16.98	50.85
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	17.92	43.38
HORVU1Hr1G093590.2	Barley	cytosol	18.68	41.6
Zm00001d030479_P001	Maize	plastid	36.6	38.49
TraesCS2B01G343000.1	Wheat	cytosol, plastid	36.23	38.25
TraesCS2D01G324100.1	Wheat	plastid	36.04	38.05
HORVU2Hr1G080360.2	Barley	mitochondrion	36.23	37.5
Os10t0363500-00	Rice	endoplasmic reticulum	36.23	37.5
TraesCS2A01G339000.1	Wheat	cytosol	36.79	35.52
PGSC0003DMT400034430	Potato	cytosol	21.7	23.96
Bra026410.1-P	Field mustard	mitochondrion	57.17	22.97
CDX89313	Canola	mitochondrion	56.98	22.32
PGSC0003DMT400007278	Potato	mitochondrion	24.53	21.49
PGSC0003DMT400066731	Potato	mitochondrion, plastid	24.72	21.2
PGSC0003DMT400023499	Potato	plastid	24.72	20.83
PGSC0003DMT400058577	Potato	plastid	20.94	19.79
PGSC0003DMT400066369	Potato	mitochondrion	28.3	19.56
PGSC0003DMT400040701	Potato	mitochondrion	19.62	18.91
PGSC0003DMT400058276	Potato	mitochondrion	26.04	18.35
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	25.47	17.74
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	25.47	17.74
PGSC0003DMT400078379	Potato	cytosol	22.83	17.49
PGSC0003DMT400003372	Potato	mitochondrion	23.58	17.12
PGSC0003DMT400027098	Potato	cytosol	19.62	16.83
PGSC0003DMT400027103	Potato	cytosol	12.45	16.14
PGSC0003DMT400026741	Potato	mitochondrion	20.57	15.22
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	17.55	15.22
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	17.55	15.22
PGSC0003DMT400024895	Potato	cytosol	12.26	14.19
PGSC0003DMT400027113	Potato	cytosol, plastid	19.25	10.1
PGSC0003DMT400066275	Potato	cytosol	2.83	4.62

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102588537	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1A6G0	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
EnsemblPlantsGene:PGSC0003DMG400006142	PGSC:PGSC0003DMG400006142	EnsemblPlants:PGSC0003DMT400015722	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF415
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002950954	RefSeq:XP_006362997.1

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006142]

Coordinates

chr7:-:44191066..44193468

Molecular Weight (calculated)

59860.3 Da

IEP (calculated)

9.967

GRAVY (calculated)

-0.167

Length

530 amino acids

Sequence
(BLAST)

001: MKILKQIRKF STFIDSTKHT HQVFVKLITP KRSKLDPIPL PHRTISDPKG QDLDFVNVAH SHLIHSDWTK LENLSSGLTP FRVKHILLKI QKDYVLSLEF
101: FKWVEVKSPN SNTLENHSIV LHVLTKSKKF KSAESILRKL LVSGSVDFPG KLFEAIVLSY RMCDSSPRVF DSLFKCHAHL KKFRNASDTF CSMKQYGFVP
201: TVESCNAFMS ALLSFDRVDV ALAFYKEMRR SRISPNVYTF NMAMSALCKS GKLEKAVEVL REMENISLKP TAVSYNTLIA GHCNRDILSV ALKLKTTMEM
301: NGVQPVNVTY NTLIHGLCKV GKLHEANKLF SEMKRTGVAP NVVTYNTLIN AYSQVGNSEM GSRLFEEMAN NGLKADILTY NALIMGLCKE GKTKKAAFLV
401: KELDKANLVP NSSTFSYLIS GQCTRRNPDR AFQLYKSMVR GGFHPNKPTL TLLISTYIKN EDYDGAMEVL KEMLERSITP DLGMLTEICS MFLRCGREGA
501: IIKLLQELEA KRLMPEGFDK TKVISSTDGR

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.