Factsheet for PGSC0003DMT400078379

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008560.1.1	Tomato	mitochondrion	96.24	88.33
VIT_01s0011g04390.t01	Wine grape	plastid	61.42	59.19
KRH16451	Soybean	plastid	55.64	56.04
KRH18049	Soybean	plastid	55.06	55.46
Bra024554.1-P	Field mustard	cytosol	24.71	50.59
CDY21405	Canola	cytosol	29.77	48.7
Bra024552.1-P	Field mustard	cytosol	17.63	48.41
CDY04764	Canola	cytosol	24.57	48.02
CDY04754	Canola	cytosol	16.62	47.52
GSMUA_Achr6P35510_001	Banana	cytosol	46.24	45.65
Zm00001d000093_P001	Maize	cytosol	34.68	45.37
AT1G22960.1	Thale cress	mitochondrion	43.79	42.2
Os12t0152600-01	Rice	plastid	41.19	39.8
HORVU5Hr1G042300.1	Barley	plastid	40.32	39.13
EES09272	Sorghum	plastid	41.04	39.06
Zm00001d023422_P001	Maize	plastid	40.17	38.83
Zm00001d044707_P001	Maize	plastid	39.88	38.76
TraesCS5B01G127400.1	Wheat	plastid	37.28	38.39
Zm00001d052540_P001	Maize	plastid	39.88	38.28
TraesCS5A01G128400.1	Wheat	plastid	37.14	38.24
TraesCS5D01G136000.1	Wheat	plastid	36.99	38.1
CDY04753	Canola	mitochondrion, plastid	22.69	37.74
OQU78719	Sorghum	cytosol	40.61	36.78
PGSC0003DMT400024895	Potato	cytosol	20.52	31.0
PGSC0003DMT400034430	Potato	cytosol	20.95	30.21
PGSC0003DMT400027103	Potato	cytosol	16.04	27.14
PGSC0003DMT400066731	Potato	mitochondrion, plastid	23.7	26.54
PGSC0003DMT400003372	Potato	mitochondrion	27.6	26.16
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	22.98	26.02
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	22.98	26.02
PGSC0003DMT400007278	Potato	mitochondrion	22.11	25.29
PGSC0003DMT400058276	Potato	mitochondrion	27.46	25.27
PGSC0003DMT400066369	Potato	mitochondrion	27.75	25.03
PGSC0003DMT400058577	Potato	plastid	19.65	24.24
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	25.87	23.52
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	25.87	23.52
PGSC0003DMT400015722	Potato	cytosol	17.49	22.83
PGSC0003DMT400066275	Potato	cytosol	10.55	22.46
PGSC0003DMT400026741	Potato	mitochondrion	21.82	21.09
PGSC0003DMT400023499	Potato	plastid	19.08	20.99
PGSC0003DMT400027098	Potato	cytosol	15.46	17.31
PGSC0003DMT400040701	Potato	mitochondrion	13.73	17.27
PGSC0003DMT400027113	Potato	cytosol, plastid	21.53	14.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885
InterPro:IPR011990	UniProt:M1D002	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812
EnsemblPlantsGene:PGSC0003DMG402030517	PGSC:PGSC0003DMG402030517	EnsemblPlants:PGSC0003DMT400078379	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029581BD	SEG:seg

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402030517]

Coordinates

chr5:-:3743052..3750579

Molecular Weight (calculated)

79246.5 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.085

Length

692 amino acids

Sequence
(BLAST)

001: MRENPFSDSD IQRLILNKIE ERGWVTEEEF WVVPDCFHSL IYDSDLLVKI LSSIRCRPRV ALRLFRWAEG QKGFKYSEFS FCTILDILIQ NGWVKSAYWV
101: VERVISSNMH KVVDLLVDGY LNLKVSVEIL NIFLRIYTKN ANVELCLLVF EKMLRNEMLP DVKNCNRILR NLRDRNLVAK AREVYKMMGE FGIMPTIITY
201: NTMLDLFCRE GEVEQALDLL SEMERRECYP NDVTYNILIN GLSKKGEFNH ARGLIGEMLN KGLKVSAHTY NPLIYGYCVK GMVVEALSLG EEMEVRGASP
301: TVSTYNTFIY ALCRQGQASE ARYWFSVMLK KNLVPDIMSY NTLIYGYCRL GDINEAFSLL HDLRSRGLFP TVITYNTIMD GLCKKGNLED AKQMKEEMMR
401: HGISPDVFTY TILVHGSCKA GNLPMAKELF DEMLQRGLEP DCIAYTTRIA GVLSLGDILN ACKLQEEMST KGFPPNIIIY NVFVDGIAKL GNLEEATELL
501: QKMVGDGLMP DHVTYTSIIH AYLAFGNLKK ARELFDEMIS KDIVPTVVTY TVLIHAHAGK GRHELAHMYF SEMQQKSILP NVITFNTLIN GLCKYRRINE
601: AYSFFAEMKA RGIIPNKYTY TILINENCDL GNWQEVLRLF KEMLDNGIQP DSFTYSAMLK NLGRDYKSHA IEYLDFILFG DEGDEGTAEA KS

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.