Factsheet for Solyc05g008560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078379	Potato	cytosol	88.33	96.24
VIT_01s0011g04390.t01	Wine grape	plastid	57.82	60.72
KRH16451	Soybean	plastid	52.25	57.35
KRH18049	Soybean	plastid	51.59	56.62
Bra024554.1-P	Field mustard	cytosol	23.21	51.78
Bra024552.1-P	Field mustard	cytosol	16.71	50.0
CDY21405	Canola	cytosol	27.85	49.65
CDY04754	Canola	cytosol	15.78	49.17
CDY04764	Canola	cytosol	23.08	49.15
GSMUA_Achr6P35510_001	Banana	cytosol	43.1	46.36
Zm00001d000093_P001	Maize	cytosol	31.83	45.37
AT1G22960.1	Thale cress	mitochondrion	40.98	43.04
Os12t0152600-01	Rice	plastid	38.59	40.64
HORVU5Hr1G042300.1	Barley	plastid	38.2	40.39
TraesCS5B01G127400.1	Wheat	plastid	35.54	39.88
TraesCS5A01G128400.1	Wheat	plastid	35.41	39.73
EES09272	Sorghum	plastid	38.2	39.61
TraesCS5D01G136000.1	Wheat	plastid	35.28	39.58
Zm00001d023422_P001	Maize	plastid	37.53	39.53
Zm00001d044707_P001	Maize	plastid	37.0	39.19
CDY04753	Canola	mitochondrion, plastid	21.62	39.18
Zm00001d052540_P001	Maize	plastid	37.14	38.84
OQU78719	Sorghum	cytosol	37.8	37.3
Solyc11g011410.1.1	Tomato	cytosol	18.83	29.58
Solyc01g109060.2.1	Tomato	mitochondrion	22.28	27.18
Solyc10g084080.1.1	Tomato	cytosol, extracellular	17.77	26.12
Solyc01g108410.1.1	Tomato	mitochondrion	26.39	25.95
Solyc01g100450.1.1	Tomato	mitochondrion	20.03	24.96
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	24.93	24.77
Solyc01g111470.2.1	Tomato	plastid	24.14	24.46
Solyc04g050550.1.1	Tomato	cytosol	18.83	24.15
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	15.78	22.45
Solyc02g068890.2.1	Tomato	mitochondrion	20.29	21.37
Solyc03g007390.2.1	Tomato	plastid	17.37	20.63
Solyc06g069700.2.1	Tomato	plastid	21.88	20.47
Solyc06g010270.1.1	Tomato	mitochondrion	11.27	18.36
Solyc10g084090.1.1	Tomato	cytosol	22.02	12.42

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4BX30
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc05g008560.1	EnsemblPlants:Solyc05g008560.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00027664A6	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:2880075..2882339

Molecular Weight (calculated)

86321.1 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.094

Length

754 amino acids

Sequence
(BLAST)

001: MTLYVRASKF IIPKSNLNHF SFFVFSSLKR LIFYSSLHQF QCPSKIKINN ITRTGSNNGG NGIRENPFTD SDIQRLILNK IEERGWVTGE EFWVVPDCFH
101: SLIYDSDLLV KILSSIRCRP RVALRLFRWA EGQKGFKYSE FTFCTILDIL IQNGWVKSAY WVVERVISSN MHKVVDLLVD GYLNLKVSVE ILNLFLRIYT
201: KNANVDQCLL VFQKMLRNEM MPDVKNCNRI LRNLRDRNLV AKAREVYKMM GEFGIMSTII TYNTMLDLFC REGEVEQALD LLSEMERREC YPNDVTYNIL
301: INGLSKKGEF NHARGLIGEM LNKGLRVSAH TYNPLIYGYC IKGMVVEALS LGEEMEVRGV SPTVSTYNTF IYALCRQGQA SEARYWFSVM LKKNLVPDIM
401: SYNPLIYGYC RLGDIDEAFS LLHDLRSRGL FPTVITYNTI MDGLCKKGNL EDAKQMKEEM MRHGISPDVF TYTILVHGSC KAGNLPMAKE LFDEMLQRGL
501: EPDCIAYTTL IAGVLSLGDI LNACKLQEEM STKGFPPNII IYNVFVDGIA KLGNLEEATE LLQKMVGDGL MPDHVTYTSI IHAYLEFGNL KKARELFDEM
601: ISKDISPTVV TYTVLIHAHA GKGRLELAHM YFSEMQQKSI LPNVITYNAL INGLCKYRRI NEAYSYFAEM KTRGIIPNKY TYTILINENC DLGNWQEVLR
701: LFKEMLDDGI QPDSFTYSAM LKNLGRDYKS HAIEYLDFIL LGDESDEGTA EAKS

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.