CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04754	Canola	cytosol	65.82	96.28
CDY21405	Canola	cytosol	92.37	77.31
AT1G22960.1	Thale cress	mitochondrion	70.9	34.96
KRH16451	Soybean	plastid	51.41	26.49
KRH18049	Soybean	plastid	51.13	26.35
Zm00001d000093_P001	Maize	cytosol	38.42	25.71
VIT_01s0011g04390.t01	Wine grape	plastid	50.0	24.65
PGSC0003DMT400078379	Potato	cytosol	48.02	24.57
Solyc05g008560.1.1	Tomato	mitochondrion	49.15	23.08
CDY10136	Canola	cytosol	23.45	22.68
GSMUA_Achr6P35510_001	Banana	cytosol	44.63	22.54
EES09272	Sorghum	plastid	42.66	20.77
Os12t0152600-01	Rice	plastid	41.24	20.39
Zm00001d023422_P001	Maize	plastid	40.68	20.11
Zm00001d052540_P001	Maize	plastid	40.68	19.97
HORVU5Hr1G042300.1	Barley	plastid	39.83	19.78
Zm00001d044707_P001	Maize	plastid	38.98	19.38
OQU78719	Sorghum	cytosol	41.53	19.24
TraesCS5A01G128400.1	Wheat	plastid	34.75	18.3
TraesCS5B01G127400.1	Wheat	plastid	34.75	18.3
TraesCS5D01G136000.1	Wheat	plastid	34.46	18.15
CDX94295	Canola	cytosol	7.91	15.82
CDY51888	Canola	cytosol, mitochondrion, plastid	21.47	15.38
CDX78962	Canola	cytosol	21.47	15.35
CDY04100	Canola	plastid	19.21	14.81
CDY17453	Canola	mitochondrion	19.21	14.81
CDX87212	Canola	plastid	25.42	14.04
CDY30265	Canola	mitochondrion	26.84	13.01
CDY57780	Canola	endoplasmic reticulum	20.9	12.87
CDY17611	Canola	cytosol	21.47	12.82
CDX80791	Canola	mitochondrion	21.75	12.81
CDX74435	Canola	mitochondrion	26.55	12.62
CDX86757	Canola	endoplasmic reticulum, extracellular	20.34	12.52
CDX71231	Canola	mitochondrion	22.32	12.52
CDY36644	Canola	mitochondrion	22.32	12.48
CDY47261	Canola	plastid	24.01	11.66
CDY11211	Canola	mitochondrion	24.29	11.61
CDX79463	Canola	plastid	19.49	11.18
CDX93473	Canola	mitochondrion	19.21	11.11
CDX84733	Canola	plastid	19.21	11.07
CDY31404	Canola	cytosol	23.16	11.07
CDX94941	Canola	cytosol, plastid	18.93	10.89
CDY49798	Canola	mitochondrion	19.21	10.48
CDY03072	Canola	mitochondrion	21.75	10.46
CDX74507	Canola	cytosol	17.51	10.46
CDX93490	Canola	mitochondrion	17.23	10.17
CDY67116	Canola	cytosol	16.95	10.12
CDX94959	Canola	mitochondrion	16.67	9.7
CDY04753	Canola	mitochondrion, plastid	11.3	9.62
CDX71311	Canola	cytosol	18.93	9.59
CDY39141	Canola	mitochondrion	18.64	9.54
CDX82665	Canola	mitochondrion, plastid	18.08	9.24
CDY42586	Canola	plastid	12.71	7.26
CDY50117	Canola	plastid	12.43	7.06
CDX94298	Canola	mitochondrion	7.91	4.92
CDX89313	Canola	mitochondrion	12.99	3.4

Protein Annotations

EnsemblPlants:CDY04764	EnsemblPlantsGene:GSBRNA2T00119447001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY04764	ProteinID:CDY04764.1
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EEA6F6	MapMan:35.1	:	:

Description

BnaC05g18250D

Coordinates

chrLK031957:+:558113..559468

Molecular Weight (calculated)

40932.8 Da

IEP (calculated)

8.993

GRAVY (calculated)

-0.409

Length

354 amino acids

Sequence
(BLAST)

001: MHGYVKLRKI REAFLLFGEL IVRNIRPSVV TYNTLMDGLC ESGDLETAQR LKAEMSRQRI DPDVKTYTTL VKGFVKKGNL SMATATYDEM LEKGIKPDRY
101: ACTTRLVGEL QLGDKDKAFR LQEEMVAKDH NARDLISYNV CIDGLCKVGD LERAIEFQRK IFRDGLVPDH VTYTTIIRAY LEKGRFKMAK VLYQEMLRKK
201: LSPSVVTYFV LIHGHAKVGR LQQAFQYSGE MEKRDIRPNV MTCNALLHGI CKAGEIDEAY RYFRKMEEDG IPPNKYSYTM LINKNSDLGK WEEVVELYRE
301: MLDKEIEPDA YTRWALFKHL DKDHASRELL LQGKTQLALS YGRNLSSVVE ARLL

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.