CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020001.1-P	Field mustard	mitochondrion	98.83	98.83
CDX94959	Canola	mitochondrion	94.33	93.09
AT1G09680.1	Thale cress	mitochondrion	84.33	83.36
VIT_14s0006g00170.t01	Wine grape	mitochondrion	57.33	58.11
PGSC0003DMT400034430	Potato	cytosol	43.33	54.17
Solyc11g011410.1.1	Tomato	cytosol	42.67	53.33
KRH17313	Soybean	mitochondrion	41.33	51.99
KRH72966	Soybean	mitochondrion	52.5	51.22
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	49.33	48.93
Os04t0463300-01	Rice	cytosol	5.67	48.57
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	35.67	44.21
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	35.67	44.21
TraesCS2B01G345200.1	Wheat	mitochondrion	43.0	42.36
TraesCS2A01G336700.1	Wheat	cytosol	42.83	42.2
TraesCS2D01G326200.1	Wheat	mitochondrion	42.17	41.54
HORVU2Hr1G080860.1	Barley	plastid	42.33	40.19
EES10956	Sorghum	mitochondrion	41.0	40.07
CDX74507	Canola	cytosol	24.5	24.79
CDY67116	Canola	cytosol	24.33	24.62
CDX94295	Canola	cytosol	7.17	24.29
CDX94941	Canola	cytosol, plastid	24.17	23.58
CDX86757	Canola	endoplasmic reticulum, extracellular	22.5	23.48
CDX93473	Canola	mitochondrion	23.67	23.2
CDY36644	Canola	mitochondrion	24.0	22.75
CDX71231	Canola	mitochondrion	23.83	22.66
CDY57780	Canola	endoplasmic reticulum	21.67	22.61
CDY17611	Canola	cytosol	22.33	22.6
CDX84733	Canola	plastid	22.67	22.15
CDY49798	Canola	mitochondrion	23.83	22.03
CDX79463	Canola	plastid	22.5	21.88
CDY10136	Canola	cytosol	13.17	21.58
CDY30265	Canola	mitochondrion	26.0	21.37
CDY11211	Canola	mitochondrion	26.33	21.32
CDY04753	Canola	mitochondrion, plastid	14.67	21.15
CDX74435	Canola	mitochondrion	26.0	20.94
CDY47261	Canola	plastid	25.33	20.85
CDY03072	Canola	mitochondrion	25.33	20.65
CDY50117	Canola	plastid	21.33	20.55
CDY17453	Canola	mitochondrion	15.5	20.26
CDY39141	Canola	mitochondrion	23.33	20.23
CDX94298	Canola	mitochondrion	19.0	20.04
CDX82665	Canola	mitochondrion, plastid	23.0	19.91
CDY42586	Canola	plastid	20.5	19.84
CDY21405	Canola	cytosol	13.83	19.62
CDY04100	Canola	plastid	15.0	19.61
CDX80791	Canola	mitochondrion	19.0	18.97
CDY51888	Canola	cytosol, mitochondrion, plastid	15.33	18.62
CDX87212	Canola	plastid	19.83	18.56
CDX78962	Canola	cytosol	15.17	18.38
CDY31404	Canola	cytosol	22.17	17.95
CDY04764	Canola	cytosol	10.17	17.23
CDX71311	Canola	cytosol	19.83	17.02
CDY04754	Canola	cytosol	5.0	12.4
CDX89313	Canola	mitochondrion	19.33	8.57

Protein Annotations

EnsemblPlants:CDX93490	EnsemblPlantsGene:GSBRNA2T00156159001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX93490	ProteinID:CDX93490.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EF04DA	MapMan:35.1	:	:

Description

BnaA06g05580D

Coordinates

chrLK031876:+:411224..413026

Molecular Weight (calculated)

67487.0 Da

IEP (calculated)

9.161

GRAVY (calculated)

-0.171

Length

600 amino acids

Sequence
(BLAST)

001: MFRIKILRNT LSRSHPQAFS RTSSLLSTWY SPESISPPPQ ADDDDDPVLV KLSIAIRDSN SSFTSSPSIS NLLPSLTARH VLDLINRNPL SLPHNSIFTF
101: FKFISSQPGF RFTVDSYFAM ARFLAVHKMF DEAQSLIALV VSRKGKNSAS SVFVSALETR GSDFLVDALM MAYTNAGFVP DAIQCFRLSR KHKFTVPIRG
201: CGSLLHRMMK VNPTETVWGF YMEILDAGYP SNVYVFNILM NKFCKEGKMC DAQKVFDEIT KRSLRPTVVS FNTLINGYCK AGNLDKGFRL KERMERGRTR
301: ADVFTYSALI NALCKENKMD GAHGLFDEMC ERGLIPNDVV FTTLIHGHSR NGRIDLMKES YQKMLSRGLQ PDIVLYNTLV NGFCKNGDLV AARNVVDGMI
401: HRGLRPDKVT YTTLIDGFCR GGDVDAALEI RKKMDQNGIE LDRVGFSALI CGMCKEGRVV DAERALREML RAGMKPDDVI YTMMMDAFCK KGDVQTSFRL
501: LKEMQRDGHV PSVVTYNVLL NGLCKLGQMK NADMLLDAML NIGVVPDDIT YNILLEGHHR HVNSSKHYIP KPEIGTVADL ASYKSLVSEL YRASKEHRNR

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.