Factsheet for VIT_14s0006g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011410.1.1	Tomato	cytosol	48.65	60.0
PGSC0003DMT400034430	Potato	cytosol	48.31	59.58
KRH72966	Soybean	mitochondrion	60.14	57.89
Bra020001.1-P	Field mustard	mitochondrion	58.11	57.33
CDX93490	Canola	mitochondrion	58.11	57.33
KRH17313	Soybean	mitochondrion	46.11	57.23
Os04t0463300-01	Rice	cytosol	6.76	57.14
CDX94959	Canola	mitochondrion	57.77	56.25
AT1G09680.1	Thale cress	mitochondrion	57.43	56.01
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	55.74	54.55
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	38.68	47.31
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	38.68	47.31
TraesCS2A01G336700.1	Wheat	cytosol	45.1	43.84
TraesCS2B01G345200.1	Wheat	mitochondrion	44.93	43.68
TraesCS2D01G326200.1	Wheat	mitochondrion	44.43	43.19
EES10956	Sorghum	mitochondrion	44.09	42.51
HORVU2Hr1G080860.1	Barley	plastid	44.26	41.46
VIT_14s0060g01220.t01	Wine grape	mitochondrion	28.72	27.91
VIT_12s0057g00740.t01	Wine grape	mitochondrion	24.49	27.36
VIT_14s0083g00550.t01	Wine grape	cytosol	27.2	27.29
VIT_12s0055g00970.t01	Wine grape	plastid	29.05	27.13
VIT_06s0004g04770.t01	Wine grape	plastid	24.83	26.11
VIT_01s0010g01780.t01	Wine grape	cytosol	23.31	24.82
VIT_06s0009g03510.t01	Wine grape	mitochondrion	25.51	24.79
VIT_08s0040g01530.t01	Wine grape	cytosol	25.34	24.19
VIT_17s0000g03060.t01	Wine grape	plastid	26.35	23.64
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	29.73	23.53
VIT_01s0011g04390.t01	Wine grape	plastid	27.7	22.84
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	28.89	22.44
VIT_13s0019g03690.t01	Wine grape	cytosol	17.74	21.52
VIT_01s0011g01910.t01	Wine grape	mitochondrion	25.0	20.9
VIT_17s0000g06480.t01	Wine grape	cytosol	6.93	15.07

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100241270	wikigene:100241270	MapMan:35.1	EMBL:AM484268	ProteinID:CAN83994
ProteinID:CAN83994.1	ProteinID:CBI33459	ProteinID:CBI33459.3	UniProt:D7TSI7	EMBL:FN596245	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100241270	wikigene:LOC100241270
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001984A97	ArrayExpress:VIT_14s0006g00170
EnsemblPlantsGene:VIT_14s0006g00170	EnsemblPlants:VIT_14s0006g00170.t01	RefSeq:XP_002263590	RefSeq:XP_002263590.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:13359585..13361370

Molecular Weight (calculated)

66838.6 Da

IEP (calculated)

8.306

GRAVY (calculated)

-0.161

Length

592 amino acids

Sequence
(BLAST)

001: MATPKILTTR NFLSSPRGGF LCFSTWMTPP TSHCHDPILT TISEAIKVSP TKPLHSSLKR ILPSLTPNHL IDLINLNPHS LSPPSLLSFF KWLSTQHHFR
101: LSIHSYCTMT HFLCTHKMLS EAQSLLQFVV SRKGKNSASS VFTSVLEARG THQSNLVFSV LMNAYTDSGY FSDAIQCFRL VRKHNLQIPF HSCGYLFDRL
201: MKLNLTSPAW AFYEEILDCG YPPDVCKFNV LMHRLCKEHK INEAQLLFGE IGKRGLRPTV VSFNTLINGY CKSGNLDQGF RLKRFMMENR VFPDVFTYSV
301: LINGLCKEGQ LDDANKLFLE MCDRGLVPND VTFTTLINGH CVTGRADLGM EIYQQMLRKG VKPDVITYNT LINGLCKVGD LREAKKLVIE MTQRGLKPDK
401: FTYTMLIDGC CKEGDLESAL EIRKEMVKEG IELDNVAFTA LISGFCREGQ VIEAERTLRE MLEAGIKPDD ATYTMVIHGF CKKGDVKTGF KLLKEMQCDG
501: HVPGVVTYNV LLNGLCKQGQ MKNANMLLDA MLNLGVVPDD ITYNILLEGH CKHGNREDFD KLQSEKGLVQ DYGSYTSLIG DLRKTCKERQ KR

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.