Factsheet for VIT_06s0004g04770.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1
extracellular 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058577	Potato	plastid	59.68	59.89
KRH50360	Soybean	cytosol, extracellular, plastid	58.79	59.53
KRH51875	Soybean	cytosol	58.79	58.27
KRH02112	Soybean	extracellular, mitochondrion	55.77	57.93
AT4G11690.1	Thale cress	endoplasmic reticulum	57.02	56.71
Bra040883.1-P	Field mustard	endoplasmic reticulum	57.19	56.0
CDY57780	Canola	endoplasmic reticulum	56.31	55.13
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	45.29	54.96
CDX86757	Canola	endoplasmic reticulum, extracellular	56.13	54.96
GSMUA_Achr6P34120_001	Banana	cytosol	39.43	44.67
Os05t0583950-00	Rice	mitochondrion	31.08	42.68
Zm00001d042911_P001	Maize	mitochondrion, plastid	30.55	41.95
OQU87837	Sorghum	plastid	30.55	41.95
TraesCS3D01G353400.1	Wheat	cytosol	29.66	40.73
HORVU3Hr1G086290.19	Barley	plastid	29.31	40.54
TraesCS3A01G359100.1	Wheat	cytosol	29.48	40.49
VIT_14s0060g01220.t01	Wine grape	mitochondrion	29.31	27.09
VIT_12s0055g00970.t01	Wine grape	plastid	28.95	25.71
VIT_14s0006g00170.t01	Wine grape	mitochondrion	26.11	24.83
VIT_08s0040g01530.t01	Wine grape	cytosol	26.82	24.35
VIT_14s0083g00550.t01	Wine grape	cytosol	25.22	24.07
VIT_12s0057g00740.t01	Wine grape	mitochondrion	22.56	23.96
VIT_01s0010g01780.t01	Wine grape	cytosol	23.09	23.38
VIT_06s0009g03510.t01	Wine grape	mitochondrion	24.51	22.66
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	30.55	22.57
VIT_01s0011g01910.t01	Wine grape	mitochondrion	27.71	22.03
VIT_01s0011g04390.t01	Wine grape	plastid	26.11	20.47
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	26.82	20.19
VIT_17s0000g03060.t01	Wine grape	plastid	23.62	20.15
VIT_17s0000g06480.t01	Wine grape	cytosol	9.24	19.12
VIT_13s0019g03690.t01	Wine grape	cytosol	16.34	18.85

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:AM479562	ProteinID:CAN72973	ProteinID:CAN72973.1	ProteinID:CBI16128
ProteinID:CBI16128.3	UniProt:D7SKF2	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0080156	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF362
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001BE0E7C	ArrayExpress:VIT_06s0004g04770
EnsemblPlantsGene:VIT_06s0004g04770	EnsemblPlants:VIT_06s0004g04770.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:5698382..5700076

Molecular Weight (calculated)

63048.0 Da

IEP (calculated)

7.421

GRAVY (calculated)

0.010

Length

563 amino acids

Sequence
(BLAST)

001: MAQTQQALIL LPKMVKSPPL KALSLFTSSA LQGFQHTHQS ISFILHLLIS SNLFSHSQSL LLKLISGQIS SSSFTPSSLF HELTQPHLDS FPTHVLIHEA
101: IINAHVRSQL PEQALFYFNQ MIGRGLVPGS NTFNNLLILL IKSNFFEKAW RVFNETKGNV KLDVYSFGIM IKGCCEVGYL DKGFEVLGQM EEMGLSPNVV
201: VYTTLIDGCC KNGDIERGKQ LFYKMGELDV VANQYTYTVL INGFFKMGLK KDGIELYEKM KLTGIVPNVY TYNSMICRCC NDGKLNNAFE LFDEMRERGV
301: ACNVVTYNTL IGGLCQERRV LEAERLMCRM KRDGLSPNLI SYNTLIDGYC SIGNLDKASS LFNQMKSSGQ SPSLATYNIL IAGFSEAKNS AGVTDMVREM
401: EARGLSPSKV TYTILMDALV RSDNIEKAFQ IYSSMEKAGL VADIYIYGVL IHGLCVVGDM KEASKLFKSL DEMHLKPNDV IYNTMIYGYC KEGSSYRALR
501: LLKEMGENGM VPNVASYNST IQILCKDEKW TEAEVLLKDM IELGLKPSIS IWNMISKARF DNV

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.