Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040883.1-P | Field mustard | endoplasmic reticulum | 80.74 | 79.48 |
| CDX86757 | Canola | endoplasmic reticulum, extracellular | 80.39 | 79.13 |
| CDY57780 | Canola | endoplasmic reticulum | 79.33 | 78.09 |
| VIT_06s0004g04770.t01 | Wine grape | plastid | 56.71 | 57.02 |
| PGSC0003DMT400058577 | Potato | plastid | 53.71 | 54.19 |
| KRH50360 | Soybean | cytosol, extracellular, plastid | 51.59 | 52.52 |
| KRH51875 | Soybean | cytosol | 51.59 | 51.41 |
| KRH02112 | Soybean | extracellular, mitochondrion | 48.59 | 50.74 |
| KRH51037 | Soybean | endoplasmic reticulum, extracellular, plastid | 40.64 | 49.57 |
| Os05t0583950-00 | Rice | mitochondrion | 32.51 | 44.88 |
| OQU87837 | Sorghum | plastid | 31.27 | 43.17 |
| Zm00001d042911_P001 | Maize | mitochondrion, plastid | 31.27 | 43.17 |
| GSMUA_Achr6P34120_001 | Banana | cytosol | 37.28 | 42.45 |
| TraesCS3D01G353400.1 | Wheat | cytosol | 28.98 | 40.0 |
| TraesCS3A01G359100.1 | Wheat | cytosol | 28.27 | 39.02 |
| HORVU3Hr1G086290.19 | Barley | plastid | 27.92 | 38.82 |
| AT1G09680.1 | Thale cress | mitochondrion | 25.8 | 24.05 |
| AT2G15630.1 | Thale cress | mitochondrion | 26.33 | 23.76 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 25.09 | 23.43 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 25.62 | 23.24 |
| AT5G38730.1 | Thale cress | cytosol | 23.67 | 22.48 |
| AT2G01740.1 | Thale cress | cytosol | 22.08 | 22.36 |
| AT5G39710.1 | Thale cress | mitochondrion | 29.33 | 22.22 |
| AT4G19890.1 | Thale cress | plastid | 27.03 | 21.83 |
| AT4G26680.1 | Thale cress | mitochondrion | 19.61 | 21.31 |
| AT5G61400.1 | Thale cress | mitochondrion | 24.03 | 20.8 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 26.5 | 19.82 |
| AT2G19280.1 | Thale cress | mitochondrion | 24.2 | 19.77 |
| AT2G16880.1 | Thale cress | cytosol | 25.09 | 19.11 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 15.55 | 19.05 |
| AT1G22960.1 | Thale cress | mitochondrion | 24.03 | 18.94 |
| AT1G05670.3 | Thale cress | mitochondrion | 24.56 | 18.76 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 24.2 | 18.0 |
| AT1G11710.1 | Thale cress | mitochondrion | 20.14 | 17.35 |
| AT5G40400.2 | Thale cress | cytosol | 20.14 | 16.74 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:826774 | ProteinID:AEE83039.1 | ArrayExpress:AT4G11690 | EnsemblPlantsGene:AT4G11690 |
| RefSeq:AT4G11690 | TAIR:AT4G11690 | RefSeq:AT4G11690-TAIR-G | EnsemblPlants:AT4G11690.1 | TAIR:AT4G11690.1 | Unigene:At.54280 |
| ProteinID:CAB39940.1 | ProteinID:CAB78212.1 | EMBL:DQ446820 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0080156 |
| GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_192906.1 | PFAM:PF01535 | PFAM:PF12854 |
| PFAM:PF13041 | PO:PO:0000084 | PO:PO:0000293 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF362 |
| InterPro:Pentatricopeptide_repeat | UniProt:Q9T0D6 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A42AA | SEG:seg |
Description
Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
Coordinates
chr4:+:7056254..7057999
Molecular Weight (calculated)
63789.4 Da
IEP (calculated)
7.871
GRAVY (calculated)
-0.105
Length
566 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.