Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040701 | Potato | mitochondrion | 40.26 | 33.82 |
| Solyc06g010270.1.1 | Tomato | mitochondrion | 32.68 | 32.61 |
| GSMUA_Achr11P... | Banana | cytosol | 20.56 | 19.35 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 25.54 | 18.91 |
| Os07t0671200-00 | Rice | extracellular | 22.51 | 18.87 |
| EER99880 | Sorghum | cytosol | 19.48 | 18.83 |
| TraesCS2B01G133900.1 | Wheat | plastid | 21.86 | 18.77 |
| TraesCS2A01G114800.1 | Wheat | plastid | 21.64 | 18.59 |
| Zm00001d007125_P001 | Maize | endoplasmic reticulum, plastid | 20.78 | 17.88 |
| Zm00001d007129_P001 | Maize | endoplasmic reticulum, plastid | 20.56 | 17.69 |
| AT4G26680.1 | Thale cress | mitochondrion | 19.7 | 17.47 |
| TraesCS2D01G115600.1 | Wheat | cytosol, plastid | 21.64 | 17.09 |
| Zm00001d007127_P001 | Maize | endoplasmic reticulum, plastid | 19.05 | 16.89 |
| HORVU2Hr1G019920.1 | Barley | cytosol | 12.99 | 16.04 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 21.0 | 16.01 |
| AT2G15630.1 | Thale cress | mitochondrion | 21.64 | 15.95 |
| AT5G38730.1 | Thale cress | cytosol | 20.13 | 15.6 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 19.05 | 15.55 |
| AT1G09680.1 | Thale cress | mitochondrion | 18.4 | 14.0 |
| AT5G40400.2 | Thale cress | cytosol | 20.13 | 13.66 |
| AT2G16880.1 | Thale cress | cytosol | 21.43 | 13.32 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 20.56 | 12.48 |
| AT2G01740.1 | Thale cress | cytosol | 14.72 | 12.16 |
| AT5G39710.1 | Thale cress | mitochondrion | 19.26 | 11.91 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 19.48 | 11.89 |
| AT1G22960.1 | Thale cress | mitochondrion | 18.18 | 11.7 |
| HORVU2Hr1G019880.2 | Barley | cytosol | 9.09 | 11.67 |
| AT5G61400.1 | Thale cress | mitochondrion | 16.23 | 11.47 |
| AT1G11710.1 | Thale cress | mitochondrion | 16.23 | 11.42 |
| AT2G19280.1 | Thale cress | mitochondrion | 16.88 | 11.26 |
| AT4G19890.1 | Thale cress | plastid | 16.88 | 11.13 |
| AT1G05670.3 | Thale cress | mitochondrion | 17.75 | 11.07 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:817349 | ProteinID:AAC98461.1 | ProteinID:AAM15326.1 | ProteinID:AEC08073.1 |
| ArrayExpress:AT2G28050 | EnsemblPlantsGene:AT2G28050 | RefSeq:AT2G28050 | TAIR:AT2G28050 | RefSeq:AT2G28050-TAIR-G | EnsemblPlants:AT2G28050.1 |
| TAIR:AT2G28050.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0090305 | GO:GO:0090617 | InterPro:IPR002885 |
| InterPro:IPR011990 | RefSeq:NP_180372.1 | PFAM:PF01535 | PFAM:PF13041 | PO:PO:0000037 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1633 | InterPro:Pentatricopeptide_repeat | UniProt:Q9ZUU7 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000009D39C | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At2g28050 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU7]
Coordinates
chr2:-:11937871..11939653
Molecular Weight (calculated)
52933.9 Da
IEP (calculated)
5.199
GRAVY (calculated)
0.038
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPQCFLKTL KTAKQTYTFS IYKLLLNSSS INQTLASPET PLSDLNLSTL RRILSDPDIK SWKCISLFNF ILENPSLFSF QPDLRTHLSL TFRVLSERRF
101: SYAKELLKPV AIDDILRYPF NVIVSSVIDE CGCEKKVVGR FFNSMIMVYS DNGKFSEVVE VFEYMKNNEV KIDEKTCTLH LLNLKRCDQM ELARDFFSLM
201: VESGIDVVTV YSLTVVVTVL CCNGEITRAR ELVEEMGLVK GVKANIVTFK SMIGCCVKRW DFEELDLVLK LMEKESVMLD LDSYKVLIDG FTSYGKVEEA
301: ERLVLMMHDK KLRVESYLYN LIMNGYSRFG LVEKVIELYS EMSSRGVTPN KDTYWVLMNG LCKAGKVCEA MSFLNELRVN EFEIDEEMYS TLSEECYRVG
401: MIDKSLEVVA EMIRDGFIPG ATICERLADS LFEVNRKEAQ MLITIVVKCG IKPKSCSQYG LK
101: SYAKELLKPV AIDDILRYPF NVIVSSVIDE CGCEKKVVGR FFNSMIMVYS DNGKFSEVVE VFEYMKNNEV KIDEKTCTLH LLNLKRCDQM ELARDFFSLM
201: VESGIDVVTV YSLTVVVTVL CCNGEITRAR ELVEEMGLVK GVKANIVTFK SMIGCCVKRW DFEELDLVLK LMEKESVMLD LDSYKVLIDG FTSYGKVEEA
301: ERLVLMMHDK KLRVESYLYN LIMNGYSRFG LVEKVIELYS EMSSRGVTPN KDTYWVLMNG LCKAGKVCEA MSFLNELRVN EFEIDEEMYS TLSEECYRVG
401: MIDKSLEVVA EMIRDGFIPG ATICERLADS LFEVNRKEAQ MLITIVVKCG IKPKSCSQYG LK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.