Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017434.1-P | Field mustard | cytosol, plastid | 77.64 | 77.92 |
| CDY17453 | Canola | mitochondrion | 63.51 | 77.34 |
| CDY04100 | Canola | plastid | 62.79 | 76.47 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 22.36 | 22.08 |
| AT5G39710.1 | Thale cress | mitochondrion | 27.19 | 20.35 |
| AT1G05670.3 | Thale cress | mitochondrion | 26.65 | 20.11 |
| AT5G61400.1 | Thale cress | mitochondrion | 23.26 | 19.88 |
| AT5G38730.1 | Thale cress | cytosol | 21.11 | 19.8 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 22.0 | 19.71 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 26.83 | 19.71 |
| AT4G19890.1 | Thale cress | plastid | 24.51 | 19.54 |
| AT1G09680.1 | Thale cress | mitochondrion | 20.93 | 19.28 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 20.57 | 18.98 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 25.4 | 18.76 |
| AT2G15630.1 | Thale cress | mitochondrion | 20.39 | 18.18 |
| AT1G11710.1 | Thale cress | mitochondrion | 20.57 | 17.5 |
| AT1G22960.1 | Thale cress | mitochondrion | 22.0 | 17.13 |
| AT4G26680.1 | Thale cress | mitochondrion | 15.74 | 16.89 |
| AT2G16880.1 | Thale cress | cytosol | 20.93 | 15.75 |
| AT2G19280.1 | Thale cress | mitochondrion | 18.78 | 15.15 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 12.16 | 14.72 |
| AT5G40400.2 | Thale cress | cytosol | 16.82 | 13.8 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:814704 | UniProt:A0A178VQM4 | ProteinID:AAD12698.1 | ProteinID:AEC05491.1 |
| ArrayExpress:AT2G01740 | EnsemblPlantsGene:AT2G01740 | RefSeq:AT2G01740 | TAIR:AT2G01740 | RefSeq:AT2G01740-TAIR-G | EnsemblPlants:AT2G01740.1 |
| TAIR:AT2G01740.1 | Unigene:At.66449 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_178283.1 |
| ProteinID:OAP08106.1 | PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF329 |
| InterPro:Pentatricopeptide_repeat | UniProt:Q9ZUA2 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000AA7CF |
| SEG:seg | : | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At2g01740 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA2]
Coordinates
chr2:-:326136..327875
Molecular Weight (calculated)
62494.2 Da
IEP (calculated)
6.420
GRAVY (calculated)
0.067
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MVREALQFLS RLRKSSNLPD PFTCNKHIHQ LINSNCGILS LKFLAYLVSR GYTPHRSSFN SVVSFVCKLG QVKFAEDIVH SMPRFGCEPD VISYNSLIDG
101: HCRNGDIRSA SLVLESLRAS HGFICKPDIV SFNSLFNGFS KMKMLDEVFV YMGVMLKCCS PNVVTYSTWI DTFCKSGELQ LALKSFHSMK RDALSPNVVT
201: FTCLIDGYCK AGDLEVAVSL YKEMRRVRMS LNVVTYTALI DGFCKKGEMQ RAEEMYSRMV EDRVEPNSLV YTTIIDGFFQ RGDSDNAMKF LAKMLNQGMR
301: LDITAYGVII SGLCGNGKLK EATEIVEDME KSDLVPDMVI FTTMMNAYFK SGRMKAAVNM YHKLIERGFE PDVVALSTMI DGIAKNGQLH EAIVYFCIEK
401: ANDVMYTVLI DALCKEGDFI EVERLFSKIS EAGLVPDKFM YTSWIAGLCK QGNLVDAFKL KTRMVQEGLL LDLLAYTTLI YGLASKGLMV EARQVFDEML
501: NSGISPDSAV FDLLIRAYEK EGNMAAASDL LLDMQRRGLV TAVSDADCSK QCGNEVNCS
101: HCRNGDIRSA SLVLESLRAS HGFICKPDIV SFNSLFNGFS KMKMLDEVFV YMGVMLKCCS PNVVTYSTWI DTFCKSGELQ LALKSFHSMK RDALSPNVVT
201: FTCLIDGYCK AGDLEVAVSL YKEMRRVRMS LNVVTYTALI DGFCKKGEMQ RAEEMYSRMV EDRVEPNSLV YTTIIDGFFQ RGDSDNAMKF LAKMLNQGMR
301: LDITAYGVII SGLCGNGKLK EATEIVEDME KSDLVPDMVI FTTMMNAYFK SGRMKAAVNM YHKLIERGFE PDVVALSTMI DGIAKNGQLH EAIVYFCIEK
401: ANDVMYTVLI DALCKEGDFI EVERLFSKIS EAGLVPDKFM YTSWIAGLCK QGNLVDAFKL KTRMVQEGLL LDLLAYTTLI YGLASKGLMV EARQVFDEML
501: NSGISPDSAV FDLLIRAYEK EGNMAAASDL LLDMQRRGLV TAVSDADCSK QCGNEVNCS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.