Factsheet for Bra017434.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04100	Canola	plastid	79.71	96.73
CDY17453	Canola	mitochondrion	78.1	94.77
AT2G01740.1	Thale cress	cytosol	77.92	77.64
Bra015447.1-P	Field mustard	cytosol	20.65	26.38
Bra013432.1-P	Field mustard	cytosol	21.36	24.04
Bra024552.1-P	Field mustard	cytosol	10.59	23.41
Bra024554.1-P	Field mustard	cytosol	13.82	22.78
Bra040883.1-P	Field mustard	endoplasmic reticulum	22.62	21.91
Bra024831.1-P	Field mustard	mitochondrion	28.01	21.31
Bra022891.1-P	Field mustard	plastid	22.44	20.36
Bra028204.1-P	Field mustard	cytosol	21.36	20.07
Bra025651.1-P	Field mustard	mitochondrion	26.57	19.87
Bra002000.1-P	Field mustard	cytosol	10.77	19.8
Bra035931.1-P	Field mustard	mitochondrion	22.98	19.78
Bra020001.1-P	Field mustard	mitochondrion	21.01	19.5
Bra019985.1-P	Field mustard	cytosol	21.01	19.12
Bra005695.1-P	Field mustard	mitochondrion	24.96	18.76
Bra015229.1-P	Field mustard	mitochondrion	20.11	17.69
Bra038853.1-P	Field mustard	mitochondrion	20.29	16.24
Bra025578.1-P	Field mustard	plastid	17.06	15.25
Bra026410.1-P	Field mustard	mitochondrion	20.11	8.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra017434	EnsemblPlants:Bra017434.1	EnsemblPlants:Bra017434.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DLQ3	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF329	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000254233A	:	:

Description

AT2G01740 (E=9e-253) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:15336719..15338392

Molecular Weight (calculated)

61882.3 Da

IEP (calculated)

5.328

GRAVY (calculated)

0.093

Length

557 amino acids

Sequence
(BLAST)

001: MVGEALQFLS RLRKSSSFPD PLTFNKHIHR LIDSSCGVLS LKLVAYLVSR GYTPHRSSFN SIVSLLCRSG QVKFAEDIVR AMRKFGSLPD VVSYNSLIDG
101: YCRNGDVGNA SLVFERLRRV PDGLFICRPD VVSFNSLFNG FGKRKMLVEV FVYMGVMFKC CSPNVVTYTT WIDSFCKSGE LESALKSFRF MKRDGLAPNV
201: VTFTCLIDGY CKSGGLEVAV SLYEEMREVG MSINVVTYSA LIDGFCKQGE MQRGVELYLQ MREDGVEPNS LVYTAFIDGY FKNGDADNAM KFLAKMLNQG
301: MKLDTAAYGV IVSGLCGIGR VKEAAEVVDD MEKGGLVPDE MILTTMMNGY FKSGRVKDAV KVYGEFVERG FEPDVVALST FIDGLAKNGR LHEAVAYFCK
401: ERANDVMYTV VIDALCKVGD FIEVERLFEA GLVADKFMYT CWIAGLCKQG NLVGAFKLKT KMVQEGLELD LLTYTTLING LASKGLMVEA RQVFDEMLRR
501: EIRPDSAVFD LLIRAYEKEG DMTAASELFL DMQARGLVTV VSDADCSKQC DSEVTCT

Best Arabidopsis Sequence Match ( AT2G01740.1 )
(BLAST)

001: MVREALQFLS RLRKSSNLPD PFTCNKHIHQ LINSNCGILS LKFLAYLVSR GYTPHRSSFN SVVSFVCKLG QVKFAEDIVH SMPRFGCEPD VISYNSLIDG
101: HCRNGDIRSA SLVLESLRAS HGFICKPDIV SFNSLFNGFS KMKMLDEVFV YMGVMLKCCS PNVVTYSTWI DTFCKSGELQ LALKSFHSMK RDALSPNVVT
201: FTCLIDGYCK AGDLEVAVSL YKEMRRVRMS LNVVTYTALI DGFCKKGEMQ RAEEMYSRMV EDRVEPNSLV YTTIIDGFFQ RGDSDNAMKF LAKMLNQGMR
301: LDITAYGVII SGLCGNGKLK EATEIVEDME KSDLVPDMVI FTTMMNAYFK SGRMKAAVNM YHKLIERGFE PDVVALSTMI DGIAKNGQLH EAIVYFCIEK
401: ANDVMYTVLI DALCKEGDFI EVERLFSKIS EAGLVPDKFM YTSWIAGLCK QGNLVDAFKL KTRMVQEGLL LDLLAYTTLI YGLASKGLMV EARQVFDEML
501: NSGISPDSAV FDLLIRAYEK EGNMAAASDL LLDMQRRGLV TAVSDADCSK QCGNEVNCS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g01740 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.