Factsheet for Bra035931.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87212	Canola	plastid	93.66	94.54
AT5G61400.1	Thale cress	mitochondrion	74.81	74.01
VIT_17s0000g06480.t01	Wine grape	cytosol	20.09	47.79
KRH54581	Soybean	mitochondrion	35.09	42.67
Zm00001d020436_P001	Maize	mitochondrion	33.85	34.49
EER96725	Sorghum	mitochondrion, plastid	33.38	33.91
Solyc06g069700.2.1	Tomato	plastid	41.42	33.25
Os09t0417500-01	Rice	mitochondrion	31.38	32.85
HORVU5Hr1G066340.2	Barley	mitochondrion	31.07	32.42
TraesCS5A01G229600.1	Wheat	mitochondrion	30.76	32.1
HORVU0Hr1G013090.3	Barley	cytosol, plastid	28.44	31.78
TraesCS5B01G228400.1	Wheat	plastid	31.38	31.23
TraesCS5D01G237900.1	Wheat	plastid	31.38	30.66
Bra015447.1-P	Field mustard	cytosol	18.86	27.98
Bra024554.1-P	Field mustard	cytosol	13.45	25.74
Bra040883.1-P	Field mustard	endoplasmic reticulum	21.79	24.52
Bra022891.1-P	Field mustard	plastid	22.72	23.94
Bra017434.1-P	Field mustard	cytosol, plastid	19.78	22.98
Bra024552.1-P	Field mustard	cytosol	8.81	22.62
Bra002000.1-P	Field mustard	cytosol	10.51	22.44
Bra013432.1-P	Field mustard	cytosol	17.0	22.22
Bra015229.1-P	Field mustard	mitochondrion	21.33	21.8
Bra019985.1-P	Field mustard	cytosol	20.56	21.73
Bra024831.1-P	Field mustard	mitochondrion	24.57	21.72
Bra025651.1-P	Field mustard	mitochondrion	24.88	21.61
Bra005695.1-P	Field mustard	mitochondrion	23.96	20.92
Bra028204.1-P	Field mustard	cytosol	19.01	20.74
Bra020001.1-P	Field mustard	mitochondrion	18.39	19.83
Bra025578.1-P	Field mustard	plastid	19.01	19.74
Bra038853.1-P	Field mustard	mitochondrion	18.7	17.39
Bra026410.1-P	Field mustard	mitochondrion	17.77	8.72

Protein Annotations

EnsemblPlants:Bra035931.1	EnsemblPlants:Bra035931.1-P	EnsemblPlantsGene:Bra035931	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF793	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI000254201D	UniProt:M4F4D1	MapMan:35.1	:	:

Description

AT5G61400 (E=5e-271) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:2860913..2862856

Molecular Weight (calculated)

73676.8 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.049

Length

647 amino acids

Sequence
(BLAST)

001: MLKLLHRPST HIYKLQPFTF RSFSQPQSPS KSPPLFPSFS SSLASAILKC RSAEEAIKLF YTSQGLNPSN SNDLRSHSAL IHVLTEARRY THARCLIKCL
101: IETLKRRPYR VFNALEDVNS SKFSNGVFSL LIMEFVEMGL FEEALFVSRE MRTSPDVKAC LTVLNGLVRR RRFDSVWVDY ESMVSRGLVP DVYVYSVLFQ
201: CCFKQGLSSK LKTLLDEMTS KEIKANVYIY TIYIRDLWRE SKMEEAEKVF DLMKKKHNVV PNLFTYSAMI GGYCKAGKLR QAYTLYKEIV VAELLPNVVV
301: FGALVDGFCK ANELVAARSL LVHMVKFGVD PNLHVYNCLI HGECRSGSLS EAMRLCSEME RFSLSPDVFT YTILINGLCS KDRLTEGDRL FQKMKSERIF
401: PSSVTYNSLI HGYCREDNME KALELCSEMT ANGVEPDIVT FSTLIDGYCK LRNMKAAMGL YSEMSIKGIV PDVVTYTALI DGQFKEANVK EALKLYSDML
501: EAGVHPNEHT FACLVDGFWK EGRVSDAIEF YLKNNHACWN HVGFTCLIQG LCQNGYVLRA TRLFSDMRSG GITPDMQSYV SMLKGYLQEK RVIDTMMLHC
601: DMIKTGVLPN LVVNQFLAMV YQENGYLRPA CFLTNSESFR NYQLICK

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.