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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024554.1-P Field mustard cytosol 98.02 73.08
CDY21405 Canola cytosol 94.05 56.03
AT1G22960.1 Thale cress mitochondrion 77.38 27.16
KRH16451 Soybean plastid 51.59 18.92
Bra002000.1-P Field mustard cytosol 22.62 18.81
KRH18049 Soybean plastid 51.19 18.78
VIT_01s0011g04390.t01 Wine grape plastid 51.98 18.25
Zm00001d000093_P001 Maize cytosol 38.1 18.15
PGSC0003DMT400078379 Potato cytosol 48.41 17.63
GSMUA_Achr6P35510_001 Banana cytosol 47.22 16.98
Solyc05g008560.1.1 Tomato mitochondrion 50.0 16.71
EES09272 Sorghum plastid 43.25 14.99
Bra015447.1-P Field mustard cytosol 25.0 14.45
HORVU5Hr1G042300.1 Barley plastid 40.48 14.31
Zm00001d052540_P001 Maize plastid 40.87 14.29
Os12t0152600-01 Rice plastid 40.48 14.25
Zm00001d023422_P001 Maize plastid 40.08 14.11
OQU78719 Sorghum cytosol 41.67 13.74
Zm00001d044707_P001 Maize plastid 38.49 13.62
TraesCS5B01G127400.1 Wheat plastid 34.13 12.8
TraesCS5A01G128400.1 Wheat plastid 34.13 12.8
TraesCS5D01G136000.1 Wheat plastid 33.73 12.65
Bra017434.1-P Field mustard cytosol, plastid 23.41 10.59
Bra013432.1-P Field mustard cytosol 18.65 9.49
Bra025651.1-P Field mustard mitochondrion 26.19 8.86
Bra035931.1-P Field mustard mitochondrion 22.62 8.81
Bra015229.1-P Field mustard mitochondrion 21.03 8.37
Bra005695.1-P Field mustard mitochondrion 24.21 8.23
Bra022891.1-P Field mustard plastid 19.44 7.98
Bra040883.1-P Field mustard endoplasmic reticulum 16.67 7.3
Bra024831.1-P Field mustard mitochondrion 21.03 7.24
Bra019985.1-P Field mustard cytosol 16.27 6.7
Bra028204.1-P Field mustard cytosol 14.29 6.07
Bra020001.1-P Field mustard mitochondrion 14.29 6.0
Bra038853.1-P Field mustard mitochondrion 15.48 5.6
Bra025578.1-P Field mustard plastid 12.3 4.98
Bra026410.1-P Field mustard mitochondrion 9.52 1.82
Protein Annotations
EnsemblPlants:Bra024552.1EnsemblPlants:Bra024552.1-PEnsemblPlantsGene:Bra024552Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015
PANTHER:PTHR24015:SF724PFAM:PF01535PFAM:PF13041PFscan:PS51375SUPFAM:SSF81901TIGRFAMs:TIGR00756
UniParc:UPI0002542A14UniProt:M4E6Z7MapMan:35.1:::
Description
AT1G22960 (E=6e-106) | pentatricopeptide (PPR) repeat-containing protein
Coordinates
chrA09:+:24454345..24455103
Molecular Weight (calculated)
29280.4 Da
IEP (calculated)
8.424
GRAVY (calculated)
-0.490
Length
252 amino acids
Sequence
(BLAST)
001: MATATYDEML GKGIKPDRYA CTTRLVGELQ LGDKDKAFRL QEEMVAKDHN ARDLISYNVC IDGLCKVGDL EGAIEFQRKI YRDGLVPDHV TYTTVIRAYL
101: EKGRFKMAKV LYQEMLRKKL SPSVITYFVL IHGHAKVGRL QQAFQYSGEM GKRDVRPNVM TCNALLHGIC KAGEIDEAYR YFRKMEEDGI RPNKYSYTML
201: INKNSDLGKW EEVVELYREI EPDAYTRWAL FKHLDKDHAS REVEFLEKIL RS
Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)
001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.