Factsheet for TraesCS5B01G127400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G128400.1	Wheat	plastid	98.51	98.51
TraesCS5D01G136000.1	Wheat	plastid	98.07	98.07
HORVU5Hr1G042300.1	Barley	plastid	93.6	88.22
Os12t0152600-01	Rice	plastid	73.51	68.99
Zm00001d023422_P001	Maize	plastid	71.13	66.76
Zm00001d044707_P001	Maize	plastid	70.09	66.15
Zm00001d000093_P001	Maize	cytosol	51.79	65.78
EES09272	Sorghum	plastid	71.13	65.75
Zm00001d052540_P001	Maize	plastid	69.35	64.63
OQU78719	Sorghum	cytosol	70.98	62.43
GSMUA_Achr6P35510_001	Banana	cytosol	48.96	46.93
KRH16451	Soybean	plastid	40.48	39.59
KRH18049	Soybean	plastid	40.33	39.45
VIT_01s0011g04390.t01	Wine grape	plastid	41.52	38.86
PGSC0003DMT400078379	Potato	cytosol	38.39	37.28
Bra024554.1-P	Field mustard	cytosol	18.15	36.09
Solyc05g008560.1.1	Tomato	mitochondrion	39.88	35.54
CDY04754	Canola	cytosol	12.65	35.12
CDY21405	Canola	cytosol	21.88	34.75
CDY04764	Canola	cytosol	18.3	34.75
Bra024552.1-P	Field mustard	cytosol	12.8	34.13
AT1G22960.1	Thale cress	mitochondrion	34.52	32.31
CDY04753	Canola	mitochondrion, plastid	18.15	29.33
TraesCS2B01G355200.1	Wheat	plastid	21.13	27.1
TraesCS4B01G280500.1	Wheat	plastid	23.07	26.41
TraesCS7B01G006900.1	Wheat	plastid	25.6	24.75
TraesCS2B01G133900.1	Wheat	plastid	19.64	24.54
TraesCS1B01G176600.2	Wheat	mitochondrion	20.83	23.85
TraesCS2B01G273600.1	Wheat	plastid	26.34	23.73
TraesCS5B01G228400.1	Wheat	plastid	22.77	23.54
TraesCS2B01G345200.1	Wheat	mitochondrion	21.28	23.48
TraesCS7B01G267600.1	Wheat	mitochondrion	21.88	23.33
TraesCS2B01G343000.1	Wheat	cytosol, plastid	16.82	22.51
TraesCS6B01G408200.1	Wheat	plastid	19.35	21.78
TraesCS7B01G036200.1	Wheat	mitochondrion	21.58	21.71
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	16.96	19.9

Protein Annotations

EnsemblPlants:TraesCS5B01G127400.1	EnsemblPlantsGene:TraesCS5B01G127400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:232626662..232628794

Molecular Weight (calculated)

74331.7 Da

IEP (calculated)

7.387

GRAVY (calculated)

0.051

Length

672 amino acids

Sequence
(BLAST)

001: MLFPTRPCKS QAPAAVAAIC SLRLPSSSPA LIPPPYHDDN PFASLLTSDP PPPDPLRQVL ATGDVHGALR GLPGLARQLF RWAEGTPHGF PRSASAFAAV
101: LVPLAEARSN RSAYPVSLRA IQAGLLLPLI SLLLTYPLSP SSHHLLNFLL RMSTKFVPEC QAQDPAPTSC WTQCLSAFQE MARQGVAPYV KVCNCVLSVL
201: CDAAMWDDMR AVYSDMLQLG VEPSIVTYNT LLDSFCKAGR IDQAVMLLKD MEAQVAGCLP NDVTYNVVIS GLARNGELDK AAQLVDRMRL SKQASAFTYN
301: PLISGLLARG FVEKADALQQ EMQNDGIVPT VVTYNTFIHG LFKRGNVEAA ELKFLEMRAM GLQPDLITYN SLINGHCKAC NLKQALWLLG DLRRAGLAPT
401: VMTYNILIDG YCRLGNLGGA MRFKEEMRAE CCLPDVCTYT ILMNGSCKVK NIAMLREEMM PSGISYDTVT YNILIDGLCK AGSLKDAYVL WMKMVSDGLQ
501: LDCVTYTCLI HAHCKRGLLR KANNIFRGMV ASGLSPSAVT YTIFIHTYCR VGDLDSAYGW FRKMLEEGVE PNEVTYNVLM NALCRIGRTE LAYQYFHEML
601: ERGLVPNKYT YTLLIDGNCK KGNWVEAVRL YCEMHQKGIH PDHCTHNALF KGFGEDHMHD TIQYLENVVL GA

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.