Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G203500.2 | Wheat | cytosol, mitochondrion | 96.34 | 96.34 |
| TraesCS3A01G201500.1 | Wheat | cytosol, extracellular, mitochondrion, plastid | 95.29 | 95.29 |
| HORVU5Hr1G009510.3 | Barley | cytosol | 91.45 | 88.81 |
| EES00885 | Sorghum | cytosol, mitochondrion | 75.22 | 75.22 |
| Zm00001d009391_P001 | Maize | cytosol | 75.04 | 75.04 |
| Os01t0546700-00 | Rice | cytosol | 78.01 | 75.0 |
| GSMUA_Achr5P09880_001 | Banana | mitochondrion | 44.85 | 38.47 |
| TraesCS1B01G176600.2 | Wheat | mitochondrion | 24.43 | 23.85 |
| TraesCS2B01G355200.1 | Wheat | plastid | 20.77 | 22.71 |
| TraesCS6B01G408200.1 | Wheat | plastid | 22.69 | 21.78 |
| TraesCS2B01G343000.1 | Wheat | cytosol, plastid | 19.02 | 21.71 |
| TraesCS2B01G345200.1 | Wheat | mitochondrion | 22.16 | 20.85 |
| TraesCS7B01G006900.1 | Wheat | plastid | 24.78 | 20.43 |
| TraesCS4B01G280500.1 | Wheat | plastid | 20.24 | 19.76 |
| TraesCS2B01G133900.1 | Wheat | plastid | 17.98 | 19.14 |
| TraesCS2B01G273600.1 | Wheat | plastid | 23.21 | 17.83 |
| TraesCS7B01G036200.1 | Wheat | mitochondrion | 20.07 | 17.22 |
| TraesCS5B01G127400.1 | Wheat | plastid | 19.9 | 16.96 |
| TraesCS5B01G228400.1 | Wheat | plastid | 18.85 | 16.62 |
| TraesCS7B01G267600.1 | Wheat | mitochondrion | 16.75 | 15.24 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G225400.1 | EnsemblPlantsGene:TraesCS3B01G225400 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF657 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:309419702..309421423
Molecular Weight (calculated)
62988.0 Da
IEP (calculated)
7.500
GRAVY (calculated)
0.119
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKTVSRIPS STLTSLLPRA LNPHVAVVDL ITTHLTADAE PTKTLDLSGL LPYLGQDELT AVVLHAGHSH PLPTLRFLIA LPPPLQPSPP HLAFLAHSLA
101: TTRFFSHALD ALTHLLRLHP THDALPTLLL SYQTAPHPSL PGLLVKALLR RARLRHAFHA ALRASASGFP PDTVAFNALL VALSRTERFH DLWAARAAMS
201: RAGVRPNAHT FNILVAALCR GEDAERAQGF IEELEEQGFE PDVVTYNTLL VGFCRRGRLQ DALHLFDVMP PRGVEPDLVS HTVLMDGLCK AGRLSDARRM
301: FDRMVHSGVS PDAVAYSVLI AGYCNECRVK EARLLLMEMV GKGLSSEGSV LKSVIESHVK IGKLLTCLNM VSPLRKYGVV IPLESYNCLI GALCEDMRPH
401: AARCLFQWMI EDGHSPSLEM YNMVVDCFCQ CGSVDEALDI KVEMSSRGVK PDFDTYRTLV TCLCRVRRSS DGKSVMAEMI ESGLQPNETI CAALVCGFCK
501: EGSLNKAELI LKAFVLDLQV CCNKSYNTLM RAYCMTRSTT ESLELQNRML ELGFVPSSDT CRSLVYGLSR SIA
101: TTRFFSHALD ALTHLLRLHP THDALPTLLL SYQTAPHPSL PGLLVKALLR RARLRHAFHA ALRASASGFP PDTVAFNALL VALSRTERFH DLWAARAAMS
201: RAGVRPNAHT FNILVAALCR GEDAERAQGF IEELEEQGFE PDVVTYNTLL VGFCRRGRLQ DALHLFDVMP PRGVEPDLVS HTVLMDGLCK AGRLSDARRM
301: FDRMVHSGVS PDAVAYSVLI AGYCNECRVK EARLLLMEMV GKGLSSEGSV LKSVIESHVK IGKLLTCLNM VSPLRKYGVV IPLESYNCLI GALCEDMRPH
401: AARCLFQWMI EDGHSPSLEM YNMVVDCFCQ CGSVDEALDI KVEMSSRGVK PDFDTYRTLV TCLCRVRRSS DGKSVMAEMI ESGLQPNETI CAALVCGFCK
501: EGSLNKAELI LKAFVLDLQV CCNKSYNTLM RAYCMTRSTT ESLELQNRML ELGFVPSSDT CRSLVYGLSR SIA
001: MKNLVSNLRF FSSYSSSIVP RCSNIPKPIL NPLYNLLPQS QNPSKIVDVI CSTLNHSDYS VLLPNLRDEV KSLIPHLGYP EISRVLLRFQ SDASRAITFF
101: KWVKFDLGKR PNVGNYCLLL HILVSSKKFP LAMQFLCELI ELTSKKEEVD VFRVLVSATD ECNWDPVVFD MLVKGYLKLG LVEEGFRVFR EVLDSGFSVS
201: VVTCNHLLNG LLKLDLMEDC WQVYSVMCRV GIHPNTYTFN ILTNVFCNDS NFREVDDFLE KMEEEGFEPD LVTYNTLVSS YCRRGRLKEA FYLYKIMYRR
301: RVVPDLVTYT SLIKGLCKDG RVREAHQTFH RMVDRGIKPD CMSYNTLIYA YCKEGMMQQS KKLLHEMLGN SVVPDRFTCK VIVEGFVREG RLLSAVNFVV
401: ELRRLKVDIP FEVCDFLIVS LCQEGKPFAA KHLLDRIIEE EGHEAKPETY NNLIESLSRC DAIEEALVLK GKLKNQNQVL DAKTYRALIG CLCRIGRNRE
501: AESLMAEMFD SEVKPDSFIC GALVYGYCKE LDFDKAERLL SLFAMEFRIF DPESYNSLVK AVCETGCGYK KALELQERMQ RLGFVPNRLT CKYLIQVLEQ
601: PSLPNHLPEN
101: KWVKFDLGKR PNVGNYCLLL HILVSSKKFP LAMQFLCELI ELTSKKEEVD VFRVLVSATD ECNWDPVVFD MLVKGYLKLG LVEEGFRVFR EVLDSGFSVS
201: VVTCNHLLNG LLKLDLMEDC WQVYSVMCRV GIHPNTYTFN ILTNVFCNDS NFREVDDFLE KMEEEGFEPD LVTYNTLVSS YCRRGRLKEA FYLYKIMYRR
301: RVVPDLVTYT SLIKGLCKDG RVREAHQTFH RMVDRGIKPD CMSYNTLIYA YCKEGMMQQS KKLLHEMLGN SVVPDRFTCK VIVEGFVREG RLLSAVNFVV
401: ELRRLKVDIP FEVCDFLIVS LCQEGKPFAA KHLLDRIIEE EGHEAKPETY NNLIESLSRC DAIEEALVLK GKLKNQNQVL DAKTYRALIG CLCRIGRNRE
501: AESLMAEMFD SEVKPDSFIC GALVYGYCKE LDFDKAERLL SLFAMEFRIF DPESYNSLVK AVCETGCGYK KALELQERMQ RLGFVPNRLT CKYLIQVLEQ
601: PSLPNHLPEN
Arabidopsis Description
Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.