Factsheet for GSMUA_Achr5P09880_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00885	Sorghum	cytosol, mitochondrion	41.02	47.82
Zm00001d009391_P001	Maize	cytosol	40.42	47.12
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	39.37	45.9
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	38.92	45.38
HORVU5Hr1G009510.3	Barley	cytosol	39.82	45.08
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	38.47	44.85
Os01t0546700-00	Rice	cytosol	39.22	43.96
GSMUA_Achr1P12600_001	Banana	extracellular	13.32	25.5
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	22.01	24.3
GSMUA_Achr8P16100_001	Banana	cytosol	9.88	24.18
GSMUA_Achr3P01360_001	Banana	mitochondrion	18.71	24.08
GSMUA_Achr11P...	Banana	cytosol	17.22	23.42
GSMUA_AchrUn_...	Banana	mitochondrion	20.06	23.3
GSMUA_Achr8P03570_001	Banana	mitochondrion	22.16	21.93
GSMUA_Achr1P17710_001	Banana	cytosol	19.76	21.6
GSMUA_Achr6P34120_001	Banana	cytosol	15.57	20.93
GSMUA_Achr8P04810_001	Banana	mitochondrion	22.6	20.77
GSMUA_Achr1P06500_001	Banana	cytosol	15.72	20.59
GSMUA_AchrUn_...	Banana	cytosol	13.62	19.91
GSMUA_Achr3P04340_001	Banana	cytosol	19.16	19.45
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	20.21	19.07
GSMUA_Achr6P35510_001	Banana	cytosol	19.91	18.97
GSMUA_Achr1P12220_001	Banana	mitochondrion	18.71	17.96
GSMUA_Achr1P22450_001	Banana	mitochondrion	13.92	16.61

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr5G09880_001	EnsemblPlants:GSMUA_Achr5P09880_001	EnsemblPlants:GSMUA_Achr5T09880_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0SX67
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF657
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295E8B8	SEG:seg

Description

Putative Pentatricopeptide repeat-containing protein At5g40400 [Source:GMGC_GENE;Acc:GSMUA_Achr5G09880_001]

Coordinates

chr5:-:7086669..7088675

Molecular Weight (calculated)

74113.8 Da

IEP (calculated)

7.035

GRAVY (calculated)

-0.028

Length

668 amino acids

Sequence
(BLAST)

001: MNLSQICLVS RTIGRHRVVG GTNLIQFSCA RATLFALVFR VHLSTGRAPS SSPPPPPTEA AHPPAAALSS AEVFSPTTND STNPLSSLLP LSLNPFNATV
101: DLITSRLKQQ QQQQQVYDDE PGGGGGELLE AHLLPFLRPQ EVSRILLRCQ SLPVASLRFF RWTQSHVLPS PHNFALLAHI LASSAHSSQA LCILSDFVRT
201: YNRVDDAFQA LLAASAACCN GHPAVFGMLV KVYTKLGRTS DALETFSRAI ELGLAPDAEA FNCLLNSLAK SRSLDLCWDL YGEMRRIGVP LNSYTFNILI
301: HALCRGSSKE GIRAEDFLEK MESEGFDPDV ITYNTLMDAY CRRGMLEDAF HLYRIMRYRG VEPDLISYTI LMNGLCRNGK VIQARQLFDT MLHRGVCPDS
401: RSYNVLLNGY CREGKLKESK LLVQEMISGG LMPDDFACST IVEAHIKGGK LLPCLNLIAL LHKIGIIISV VVYKCLINAL CMEGRPSAAR SLLKRMQVDG
501: YEPDLEIYNS LMDSFCKCES LESEALALKN EMVGKGIRPD IVTYQILIKC LCSSGKTFEG ESLMKEMIEW DIQPDPGICA ALVGGCCEKR DLAKAESLLV
601: YFAEKFQIYE NNGYNSLIRL YCYEREMSET IELQDRLQKL GYISNGETCR SLIHGLSRSR NHHGSISS

Best Arabidopsis Sequence Match ( AT5G40400.2 )
(BLAST)

001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.