Factsheet for GSMUA_Achr6P34120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0583950-00	Rice	mitochondrion	36.62	44.39
Zm00001d042911_P001	Maize	mitochondrion, plastid	35.81	43.41
TraesCS3A01G359100.1	Wheat	cytosol	35.81	43.41
TraesCS3D01G353400.1	Wheat	cytosol	35.21	42.68
OQU87837	Sorghum	plastid	35.21	42.68
HORVU3Hr1G086290.19	Barley	plastid	34.0	41.52
VIT_06s0004g04770.t01	Wine grape	plastid	44.67	39.43
AT4G11690.1	Thale cress	endoplasmic reticulum	42.45	37.28
CDX86757	Canola	endoplasmic reticulum, extracellular	42.86	37.04
PGSC0003DMT400058577	Potato	plastid	41.45	36.72
Bra040883.1-P	Field mustard	endoplasmic reticulum	42.45	36.7
KRH50360	Soybean	cytosol, extracellular, plastid	41.05	36.69
CDY57780	Canola	endoplasmic reticulum	42.05	36.35
KRH51875	Soybean	cytosol	40.85	35.74
KRH02112	Soybean	extracellular, mitochondrion	38.83	35.61
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	29.38	31.47
GSMUA_Achr8P16100_001	Banana	cytosol	15.9	28.94
GSMUA_Achr1P12600_001	Banana	extracellular	16.9	24.07
GSMUA_Achr11P...	Banana	cytosol	21.73	22.0
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	24.75	20.33
GSMUA_AchrUn_...	Banana	mitochondrion	23.34	20.17
GSMUA_AchrUn_...	Banana	cytosol	17.5	19.04
GSMUA_Achr1P12220_001	Banana	mitochondrion	26.56	18.97
GSMUA_Achr3P01360_001	Banana	mitochondrion	19.32	18.5
GSMUA_Achr1P06500_001	Banana	cytosol	18.51	18.04
GSMUA_Achr1P17710_001	Banana	cytosol	21.93	17.84
GSMUA_Achr3P04340_001	Banana	cytosol	23.14	17.48
GSMUA_Achr8P04810_001	Banana	mitochondrion	24.75	16.92
GSMUA_Achr8P03570_001	Banana	mitochondrion	22.13	16.3
GSMUA_Achr1P22450_001	Banana	mitochondrion	18.11	16.07
GSMUA_Achr6P35510_001	Banana	cytosol	22.13	15.69
GSMUA_Achr5P09880_001	Banana	mitochondrion	20.93	15.57
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	21.73	15.25

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0080156	EnsemblPlantsGene:GSMUA_Achr6G34120_001
EnsemblPlants:GSMUA_Achr6P34120_001	EnsemblPlants:GSMUA_Achr6T34120_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0TCK5	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002969988	SEG:seg	:	:

Description

Putative Pentatricopeptide repeat-containing protein At4g11690 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34120_001]

Coordinates

chr6:-:32928481..32930410

Molecular Weight (calculated)

55162.0 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.039

Length

497 amino acids

Sequence
(BLAST)

001: MPSTHNPFLL IQKIIKTQPI HHPATTSLIF RLLIDAHIRS QKPCPAALYL DRMLRCGLTP PITTFNRLLH LLLASDLLHT ASSLFLDAKN RVPLDAYSFG
101: IMIRGLCDAG RLDEASNLME EFEAGGSPPS VVMYTTLIDG CCRRGSFDAA RRLFDRMKGQ GVAPNEFTYT VMISGCFRNG FSNAGFELYD EMKRAGVFPN
201: LYTYNVLMSQ CCKSQDLVFA FQLFDEMTEK GVLPNVVTYN TLIGGFCRQS MVKDATKLLV RMKDAGLRPT GDLVGAANAY REMQDRGLTP TNVTYTILID
301: AFAREDDMDR AFEMHRSMER AGLAADAHTY GVLMRGLCMQ GEMKDARKLF DAMKDKGLKP TDVINNMMIY GYCREGSSYR ALRLLREMIG NGMVPNAASY
401: GLTIRVLCKD GKRQEAEVLL SKVIHSGLQS LSSSILSLVC QAFSDSSCSS SLFSLHDASF LCCIHARRPS SNSLPQSTSS DIWWPSSELV ILGTAQC

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.