Factsheet for TraesCS3A01G359100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G353400.1	Wheat	cytosol	96.34	96.34
HORVU3Hr1G086290.19	Barley	plastid	87.56	88.21
Os05t0583950-00	Rice	mitochondrion	73.66	73.66
OQU87837	Sorghum	plastid	73.17	73.17
Zm00001d042911_P001	Maize	mitochondrion, plastid	72.2	72.2
GSMUA_Achr6P34120_001	Banana	cytosol	43.41	35.81
PGSC0003DMT400058577	Potato	plastid	42.68	31.19
KRH50360	Soybean	cytosol, extracellular, plastid	40.0	29.5
VIT_06s0004g04770.t01	Wine grape	plastid	40.49	29.48
KRH51875	Soybean	cytosol	40.24	29.05
KRH02112	Soybean	extracellular, mitochondrion	37.8	28.6
AT4G11690.1	Thale cress	endoplasmic reticulum	39.02	28.27
Bra040883.1-P	Field mustard	endoplasmic reticulum	38.78	27.65
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	31.22	27.59
CDX86757	Canola	endoplasmic reticulum, extracellular	38.29	27.3
CDY57780	Canola	endoplasmic reticulum	37.56	26.78
TraesCS1A01G160000.1	Wheat	mitochondrion	28.78	23.79
TraesCS2A01G326700.1	Wheat	plastid	29.51	23.09
TraesCS2A01G114800.1	Wheat	plastid	27.56	21.0
TraesCS4A01G023000.1	Wheat	plastid	27.56	19.25
TraesCS2A01G336700.1	Wheat	cytosol	27.07	18.23
TraesCS7A01G109000.1	Wheat	plastid	30.24	17.84
TraesCS7A01G134800.1	Wheat	mitochondrion	28.78	17.56
TraesCS6A01G371200.1	Wheat	plastid	24.88	17.09
TraesCS7A01G360200.1	Wheat	mitochondrion	28.78	16.86
TraesCS5A01G229600.1	Wheat	mitochondrion	24.63	16.29
TraesCS5A01G128400.1	Wheat	plastid	26.1	15.92
TraesCS2A01G339000.1	Wheat	cytosol	20.24	15.12
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	28.29	15.08
TraesCS4A01G045400.1	Wheat	plastid	26.34	14.42
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	19.51	13.96

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0080156
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long
PFscan:PS51375	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
EnsemblPlantsGene:TraesCS3A01G359100	EnsemblPlants:TraesCS3A01G359100.1	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:607062737..607063969

Molecular Weight (calculated)

44636.0 Da

IEP (calculated)

8.956

GRAVY (calculated)

-0.160

Length

410 amino acids

Sequence
(BLAST)

001: MSATTAEAVR RLCAAGELRS ALAHLARGAK AGDGALDVAA CTALVHACCR TGDLAEARRV FGAMPRLGLA PNEVTFTALI HGHFVRGRRD EGFALFDEMR
101: RGGVEPNIYT YNVLIGEWCR TGEFEGARRL FDEMPAKGVA RNAVSYNTLI AGLCRHGRMK DAAWLLETMR KEGIRPSIVT FNLLVDGYGK AGQMSNALHF
201: SNQIRAAGHQ PNALTHNALI AGFCRARDIA RANRAFSDMK ERGLTPTNGT YTILIDALAR GGDMDKAFEM FADMGKAGLE VDVRAYGVLV HALCMEGNMK
301: DARKLFQSME EKGVKANGVI YDMMIFGYGR EGNSYKAMKL ITEMRKNGLV PNFASYGLTI RSLCNDGKCP EAEALIKDMV QAGLQPNESL SQALLHAKAR
401: QGSSTSNFFT

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.