Factsheet for TraesCS4A01G045400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G259600.1	Wheat	cytosol	96.8	91.89
HORVU4Hr1G070310.1	Barley	plastid	94.79	84.93
Os03t0201400-02	Rice	cytosol	83.31	78.39
KXG39937	Sorghum	cytosol, plastid	80.37	75.82
Zm00001d028107_P001	Maize	nucleus	71.16	74.65
GSMUA_Achr1P22450_001	Banana	mitochondrion	43.66	58.39
VIT_13s0019g03690.t01	Wine grape	cytosol	34.05	52.25
KRH34922	Soybean	cytosol	30.31	49.46
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	37.38	45.83
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	37.38	45.83
Bra002000.1-P	Field mustard	cytosol	17.76	43.89
Solyc01g111470.2.1	Tomato	plastid	41.66	41.94
CDY31404	Canola	cytosol	38.45	38.87
CDX71311	Canola	cytosol	36.05	38.63
AT2G16880.1	Thale cress	cytosol	37.92	38.22
TraesCS4A01G023000.1	Wheat	plastid	24.03	30.66
TraesCS2A01G326700.1	Wheat	plastid	20.69	29.58
TraesCS7A01G109000.1	Wheat	plastid	25.23	27.19
TraesCS2A01G114800.1	Wheat	plastid	19.09	26.58
TraesCS3A01G359100.1	Wheat	cytosol	14.42	26.34
TraesCS5A01G128400.1	Wheat	plastid	22.3	24.85
TraesCS1A01G160000.1	Wheat	mitochondrion	16.42	24.8
TraesCS5A01G229600.1	Wheat	mitochondrion	19.76	23.87
TraesCS7A01G134800.1	Wheat	mitochondrion	21.23	23.66
TraesCS2A01G336700.1	Wheat	cytosol	18.83	23.15
TraesCS7A01G360200.1	Wheat	mitochondrion	21.5	23.0
TraesCS6A01G371200.1	Wheat	plastid	18.29	22.95
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	17.49	22.86
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	23.23	22.63
TraesCS2A01G339000.1	Wheat	cytosol	15.62	21.31

Protein Annotations

EnsemblPlants:TraesCS4A01G045400.1	EnsemblPlantsGene:TraesCS4A01G045400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF871
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:37310357..37312833

Molecular Weight (calculated)

81372.5 Da

IEP (calculated)

7.438

GRAVY (calculated)

-0.177

Length

749 amino acids

Sequence
(BLAST)

001: MPTLLAAYLP RLTASHHPRV LAVAASNPAL ASPESLLAYR SFLSPPSCLP SLLXXXXXXX XXXXXXLLLS FVPLDPLRHL HRHLLGHLPS TPLADAALCA
101: YSRLRLPHLA AQLLHSLRRR IRVRPSLQAA NAVLSALARS PSTSPQASLD AFRSLIALRL HPNHYTFNLL VHTHCSKGTL ADALATLSTM QGFGLSPDAV
201: TYNTLLHAHC RKGMLGEART LLARMKKEGI TPTRPTYNTL VSAYAKLGWI KQATKVLEAM TANGLEPDLW TYNVLIAGLC QAEKVDEAFR LKDEMERLGT
301: LLPDVVTYNT LADACFKWRC SSDALRLLEE MREKGVKPTL VTHNIVIKGL CKDGELEEAL GCFKKMADEG LAPDVITYNT LIDAYCKAGN VAKAFALMDE
401: MVGRGLKLDT FTLNTVLYNL CKEKRYEEAQ GLLQSPSQRG FVPDEVSYGT VMAAYFNEYN PEPALRLWDE MIQRKLTPTI STYNTLIKGL GRMGRLKEAI
501: DKLNELMEKG LVPDDTTYNI VIHAYCKEGD LENAFQFHNK MVENSFKPDV VTCNTLMNGL CLQGKLDKAM KLFDSWVEKG KKVDVITYNT LIHAMCKNGD
601: VDAALHFLAD MEVRGLQPDA FTYNVVLSAL SEAGRPEEAH SMLHKLSESG KLSQSFSSPL LKPSSVDETE SGKDHEGNTE EETGGNPQDS ALEAYTKRVN
701: ELCTGGQFKE AKAILDEMMQ KGMSVDSSTY ITLMEGLIKR QKRQTHAAG

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.