Factsheet for VIT_13s0019g03690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34922	Soybean	cytosol	60.66	64.49
Bra002000.1-P	Field mustard	cytosol	33.61	54.13
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	64.55	51.55
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	64.55	51.55
GSMUA_Achr1P22450_001	Banana	mitochondrion	49.39	43.04
Solyc01g111470.2.1	Tomato	plastid	60.45	39.65
CDY31404	Canola	cytosol	51.84	34.14
TraesCS4A01G045400.1	Wheat	plastid	52.25	34.05
CDX71311	Canola	cytosol	48.16	33.62
Os03t0201400-02	Rice	cytosol	52.25	32.04
TraesCS4D01G259600.1	Wheat	cytosol	51.43	31.81
AT2G16880.1	Thale cress	cytosol	48.36	31.76
KXG39937	Sorghum	cytosol, plastid	51.64	31.74
Zm00001d028107_P001	Maize	nucleus	44.47	30.39
HORVU4Hr1G070310.1	Barley	plastid	51.84	30.26
VIT_17s0000g06480.t01	Wine grape	cytosol	16.8	30.15
VIT_06s0009g03510.t01	Wine grape	mitochondrion	33.2	26.6
VIT_01s0010g01780.t01	Wine grape	cytosol	27.46	24.1
VIT_12s0055g00970.t01	Wine grape	plastid	25.61	19.72
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	29.51	18.9
VIT_08s0040g01530.t01	Wine grape	cytosol	23.98	18.87
VIT_01s0011g04390.t01	Wine grape	plastid	27.25	18.52
VIT_01s0011g01910.t01	Wine grape	mitochondrion	26.84	18.5
VIT_14s0006g00170.t01	Wine grape	mitochondrion	21.52	17.74
VIT_14s0060g01220.t01	Wine grape	mitochondrion	21.31	17.08
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	26.02	16.98
VIT_06s0004g04770.t01	Wine grape	plastid	18.85	16.34
VIT_14s0083g00550.t01	Wine grape	cytosol	19.67	16.27
VIT_12s0057g00740.t01	Wine grape	mitochondrion	13.93	12.83
VIT_17s0000g03060.t01	Wine grape	plastid	16.8	12.42

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100254777	wikigene:100254777	MapMan:35.1	EMBL:AM430309	ProteinID:CAN78081
ProteinID:CAN78081.1	ProteinID:CCB56218	ProteinID:CCB56218.1	UniProt:F6HNJ9	EMBL:FN595998	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100254777	wikigene:LOC100254777	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF871	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210A455	ArrayExpress:VIT_13s0019g03690	EnsemblPlantsGene:VIT_13s0019g03690	EnsemblPlants:VIT_13s0019g03690.t01	RefSeq:XP_002275423
RefSeq:XP_002275423.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:4840333..4847042

Molecular Weight (calculated)

55492.7 Da

IEP (calculated)

4.864

GRAVY (calculated)

-0.407

Length

488 amino acids

Sequence
(BLAST)

001: MGWLKEAANV IELMTQNNLL PDVWTYNMLI NGLCNEGRIE EAFKLRDEME NLKLLPDVVS YNTLINGCLE WSKISEAFKL LEEMSEKGVK PNAVTHNIMV
101: KWYCKEGKMD DASNTITKME ESGFSPDCVT YNTLINGYCK AGNMGEAFRT MDEMGRKNMK MDSVTLNTIL RTLCREKKLE EAYKLLSSAR KRGYFIDEVS
201: YGTLIVGYFK DGNVDRALKL WDEMKEKEII PSTVTYNCII GGLCQCGKTE QAISKLNELL ESGLLPDETT YNTILHGYCR EGDVEKAFQF HNKMVENSFK
301: PDVFTCNILL RGLCMEGVLE KALKLFNTWV SKGKAIDTVT YNTLITSLCK EGRLDDAFNL LSEMEEKELG PDHYTYNAII TALTDSGRIR EAEEFMSKML
401: EKGNLPDQVL QLDKNETVVT SETSEESDSS SVAYSEWIKE LCTEGKYKDA MRIFGESKQK GITVDKSTYI NLMDGLIKRR KSISKEAR

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.