Factsheet for VIT_06s0009g03510.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024895	Potato	cytosol	49.1	65.28
KRH14574	Soybean	plastid	65.52	62.34
GSMUA_AchrUn_...	Banana	mitochondrion	55.99	59.3
PGSC0003DMT400003372	Potato	mitochondrion	66.01	55.07
KXG40115	Sorghum	cytosol	38.92	54.86
TraesCS4A01G023000.1	Wheat	plastid	50.25	52.13
TraesCS4B01G280500.1	Wheat	plastid	49.75	51.62
AT5G01110.2	Thale cress	cytosol, plastid	61.74	49.67
Bra005695.1-P	Field mustard	mitochondrion	59.93	49.26
CDY11211	Canola	mitochondrion	59.77	49.12
CDX80791	Canola	mitochondrion	47.13	47.75
Zm00001d027800_P001	Maize	mitochondrion	50.57	47.46
TraesCS4D01G279000.1	Wheat	mitochondrion	50.41	47.3
HORVU4Hr1G074200.9	Barley	mitochondrion	50.41	45.01
Os03t0165100-00	Rice	cytosol, mitochondrion	49.59	41.48
VIT_13s0019g03690.t01	Wine grape	cytosol	26.6	33.2
VIT_01s0010g01780.t01	Wine grape	cytosol	27.26	29.86
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	34.65	28.21
VIT_12s0055g00970.t01	Wine grape	plastid	29.06	27.92
VIT_17s0000g06480.t01	Wine grape	cytosol	12.32	27.57
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	32.84	26.25
VIT_01s0011g04390.t01	Wine grape	plastid	30.21	25.63
VIT_14s0060g01220.t01	Wine grape	mitochondrion	25.62	25.62
VIT_14s0006g00170.t01	Wine grape	mitochondrion	24.79	25.51
VIT_08s0040g01530.t01	Wine grape	cytosol	25.45	25.0
VIT_06s0004g04770.t01	Wine grape	plastid	22.66	24.51
VIT_14s0083g00550.t01	Wine grape	cytosol	22.33	23.05
VIT_12s0057g00740.t01	Wine grape	mitochondrion	19.05	21.89
VIT_17s0000g03060.t01	Wine grape	plastid	22.99	21.21
VIT_01s0011g01910.t01	Wine grape	mitochondrion	24.3	20.9

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100244765	wikigene:100244765	MapMan:35.1	EMBL:AM475217	ProteinID:CAN63985
ProteinID:CAN63985.1	ProteinID:CCB49042	ProteinID:CCB49042.1	UniProt:F6HA22	EMBL:FN595504	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0032543	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EntrezGene:LOC100244765	wikigene:LOC100244765	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF770	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00021095A7	ArrayExpress:VIT_06s0009g03510	EnsemblPlantsGene:VIT_06s0009g03510	EnsemblPlants:VIT_06s0009g03510.t01	RefSeq:XP_002275790	RefSeq:XP_002275790.2

Description

No Description!

Coordinates

chr6:-:16762894..16765623

Molecular Weight (calculated)

68538.7 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.009

Length

609 amino acids

Sequence
(BLAST)

001: MIHILVRSRR LPDAQAVILR MVRKSGVSRV EIVESLVLTY GNCGSNPLVF DLLVRTYVQA RKLREGCEAF RVLKSKGLCV SINACNSLLG GLVKVGWVDL
101: AWEIYQEVVR SGVQVNVYTL NIMINALCKN QKIENTKSFL SDMEEKGVFP DVVTYNTLIN AYCRQGLLEE AFELMDSMSG KGLKPCVFTY NAIINGLCKT
201: GKYLRAKGVL DEMLKIGMSP DTATYNILLV ECCRNDNMMD AERIFDEMPS QGVVPDLVSF SALIGLLSKN GCLDQALKYF RDMKNAGLAP DNVIYTILIG
301: GFCRNGVMSE ALKVRDEMLE QGCVLDVVTY NTILNGLCKE KMLSEADELF TEMTERGVFP DFYTFTTLIN GYSKDGNMNK AVTLFEMMIQ RNLKPDVVTY
401: NTLIDGFCKG SEMEKVNELW NDMISRRIYP NHISYGILIN GYCNMGCVSE AFRLWDEMVE KGFEATIITC NTIVKGYCRA GNAVKADEFL SNMLLKGIVP
501: DGITYNTLIN GFIKEENMDR AFALVNKMEN SGLLPDVITY NVILNGFSRQ GRMQEAELIM LKMIERGVNP DRSTYTSLIN GHVTQNNLKE AFRVHDEMLQ
601: RGFVPDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.