Factsheet for TraesCS4D01G279000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G280500.1	Wheat	plastid	88.91	98.3
TraesCS4A01G023000.1	Wheat	plastid	88.14	97.44
HORVU4Hr1G074200.9	Barley	mitochondrion	96.92	92.23
Zm00001d027800_P001	Maize	mitochondrion	79.51	79.51
KXG40115	Sorghum	cytosol	52.85	79.4
Os03t0165100-00	Rice	cytosol, mitochondrion	82.59	73.63
GSMUA_AchrUn_...	Banana	mitochondrion	48.07	54.26
PGSC0003DMT400024895	Potato	cytosol	37.29	52.84
VIT_06s0009g03510.t01	Wine grape	mitochondrion	47.3	50.41
KRH14574	Soybean	plastid	47.92	48.59
PGSC0003DMT400003372	Potato	mitochondrion	47.92	42.6
Bra005695.1-P	Field mustard	mitochondrion	45.3	39.68
CDY11211	Canola	mitochondrion	45.3	39.68
AT5G01110.2	Thale cress	cytosol, plastid	44.68	38.31
CDX80791	Canola	mitochondrion	35.13	37.94
TraesCS2D01G336100.1	Wheat	plastid	23.88	29.58
TraesCS3D01G353400.1	Wheat	cytosol	17.72	28.05
TraesCS7D01G103900.1	Wheat	plastid	28.97	27.05
TraesCS1D01G157200.1	Wheat	mitochondrion	22.96	25.96
TraesCS7D01G362900.1	Wheat	mitochondrion	23.88	25.04
TraesCS2D01G229300.1	Wheat	mitochondrion	28.2	24.53
TraesCS2D01G115600.1	Wheat	cytosol, plastid	22.03	24.44
TraesCS5D01G136000.1	Wheat	plastid	24.81	23.96
TraesCS2D01G326200.1	Wheat	mitochondrion	21.57	22.99
TraesCS5D01G237900.1	Wheat	plastid	23.27	22.81
TraesCS4D01G259600.1	Wheat	cytosol	27.58	22.69
TraesCS6D01G355100.1	Wheat	plastid	20.8	22.61
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	18.8	21.29
TraesCS7D01G134400.2	Wheat	mitochondrion	21.42	20.75
TraesCS2D01G324100.1	Wheat	plastid	13.25	17.13

Protein Annotations

EnsemblPlants:TraesCS4D01G279000.1	EnsemblPlantsGene:TraesCS4D01G279000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF648
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:450221153..450223102

Molecular Weight (calculated)

72707.4 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.172

Length

649 amino acids

Sequence
(BLAST)

001: MAIRRRLPCL PAVAVSTRRS TASLAVSHGG TGARPSTAVL AAAATAAAAA GRASECQSLL LRMSRRRGAS RLDIVSSLLA SSPTPQPQVF DLLIRTYTQS
101: RKPREAFEAF RLLLDRRIPI PAAASNALLA ALSRAGWPHL TADAYRLVLS SDSEVNTYTL NIMVHSYCKA LQFDKVDAVI SEMEKRCVFP DVVTHNVMID
201: ARFRAGDVEA AMAVVDSMVS QGIKPGILTY NAVLKGLCRN GKWDKAREVF RAMNECGVAP DVRSFNMLIG GFCRVKEPDE AMKFYKEMRR RGVTPDIVSF
301: SCLIGLFARR GKMDRTAAYL REMREFGLMP DGVIYTMVIG GYCRAGSMLE ALRVRDEMVG RGCLPDVVTY NTLLNGLCKE RRLSDAEELL TEMRERGVPP
401: DLCTFTTLIH GYCREGNIEK ALQLFETMLH ERLMPDIVTY NTLIDGMCRQ GDLGKANELW DDMHSREIFP NHITYSILID SHCEKGQVDD AFGFLDEMIN
501: KGIVPNIMTY NSIIKGYCRS GNVLKGQQFL QKMRDAKVLP DLITYNTLIH GYVKEEKMHE TFNLLNMMEN EKVQPDTVTY NMIINGFSVH GNMQEADWVY
601: KKMGARGIEP DRYTYMSMIN GHVAAGNSKE SFQLHDEMLQ KGFAPDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.