Factsheet for TraesCS7D01G103900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G006900.1	Wheat	plastid	97.55	97.55
TraesCS7A01G109000.1	Wheat	plastid	97.55	97.55
HORVU7Hr1G023200.23	Barley	cytosol	88.2	88.33
Os06t0152500-00	Rice	plastid	82.01	82.13
OQU75844	Sorghum	cytosol	64.17	80.94
Zm00001d045319_P001	Maize	plastid	77.12	77.57
Zm00001d010121_P001	Maize	plastid	76.83	77.28
PGSC0003DMT400066275	Potato	cytosol	22.45	48.0
GSMUA_Achr3P04340_001	Banana	cytosol	42.73	45.14
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	46.33	42.26
CDX74435	Canola	mitochondrion	43.74	40.81
CDY30265	Canola	mitochondrion	42.73	40.68
Bra025651.1-P	Field mustard	mitochondrion	43.6	40.67
AT5G39710.1	Thale cress	mitochondrion	43.17	40.16
KRG89236	Soybean	plastid	43.88	39.2
PGSC0003DMT400066369	Potato	mitochondrion	42.88	38.85
Solyc01g108410.1.1	Tomato	mitochondrion	42.59	38.59
KRH49758	Soybean	plastid	34.82	34.38
TraesCS3D01G353400.1	Wheat	cytosol	18.56	31.46
TraesCS2D01G336100.1	Wheat	plastid	23.45	31.11
TraesCS4D01G279000.1	Wheat	mitochondrion	27.05	28.97
TraesCS1D01G157200.1	Wheat	mitochondrion	23.31	28.22
TraesCS2D01G115600.1	Wheat	cytosol, plastid	22.3	26.5
TraesCS5D01G136000.1	Wheat	plastid	25.04	25.89
TraesCS2D01G326200.1	Wheat	mitochondrion	22.3	25.45
TraesCS7D01G362900.1	Wheat	mitochondrion	22.45	25.2
TraesCS2D01G229300.1	Wheat	mitochondrion	26.76	24.93
TraesCS7D01G134400.2	Wheat	mitochondrion	24.03	24.93
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	20.29	24.61
TraesCS4D01G259600.1	Wheat	cytosol	27.91	24.59
TraesCS2D01G324100.1	Wheat	plastid	17.41	24.1
TraesCS6D01G355100.1	Wheat	plastid	20.58	23.95
TraesCS5D01G237900.1	Wheat	plastid	19.71	20.69

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS7D01G103900	EnsemblPlants:TraesCS7D01G103900.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:63442457..63444544

Molecular Weight (calculated)

75267.8 Da

IEP (calculated)

8.168

GRAVY (calculated)

0.040

Length

695 amino acids

Sequence
(BLAST)

001: MAAARQAAGA SGSLHQHPVQ HAHLAALLNP TPRTPPLPPP LRRRHLPLSP QAASRLAASF PPLPLLLALL SALRLLPSPP PPRPFDALIR AYASLPSPSL
101: AAAALAFARS AGYAPSLPAY NAVLLALSDA SLASARRFLE GSMLRAGVAP NVYTYNILVR ALCARGRREE ALAAVVDGDM RAAGCAPNAV TYNTLVAAFC
201: RAGDVGGAER LVAAMREAGV RPSLVTFNTV VNGMCKAGRM EDARKVFDGM AREGLAPDGV SYNTLVSGYC KAGCLHEALT VFSEMSQKGV APDVVTFTSL
301: IHAMCRAGNL ERAVALVGQM KERGLRMNEI AFTALIDGFC KNGFLDDALL ALKEMRECRI KPSVVCYNAL INGYCKLGRM DEARELVDEM EAKGVKPDVV
401: TYSTILSGYC KIGDTDSAFE LNRKMLKKGV IPDAITYSSL IRGLCEEKRL SDACELFEKM LQLGLQPDEF TYTILIDGHC KEWDVEKALS LHDEMIKKGV
501: LPDVVTYSVL IDGLSKSART KEAQRLLFKL YYEDPVPDNI KYEALMRCCR KAEFKSVVAL LKGFSMKGLM NEADKVYQSM LDRGWKLDGS VYAVLIHGHC
601: RGGNVLKALN FHKKMLQCGF PPNSTSTISL VRGLFEEGMT VEADTVIQEL LNCCSLADAE TSKALIDLNR NEGNVDAVVD VLRGMTRDGL LPSSG

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.