CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89236	Soybean	plastid	72.3	65.42
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	52.13	48.16
CDX74435	Canola	mitochondrion	48.86	46.17
Bra025651.1-P	Field mustard	mitochondrion	48.58	45.91
AT5G39710.1	Thale cress	mitochondrion	48.58	45.78
CDY30265	Canola	mitochondrion	47.44	45.75
Solyc01g108410.1.1	Tomato	mitochondrion	47.87	43.94
PGSC0003DMT400066369	Potato	mitochondrion	47.73	43.81
OQU75844	Sorghum	cytosol	31.25	39.93
GSMUA_Achr3P04340_001	Banana	cytosol	34.94	37.39
Os06t0152500-00	Rice	plastid	35.51	36.02
TraesCS7A01G109000.1	Wheat	plastid	34.8	35.25
TraesCS7D01G103900.1	Wheat	plastid	34.38	34.82
TraesCS7B01G006900.1	Wheat	plastid	34.38	34.82
Zm00001d045319_P001	Maize	plastid	34.09	34.73
Zm00001d010121_P001	Maize	plastid	34.09	34.73
HORVU7Hr1G023200.23	Barley	cytosol	33.38	33.86
KRH33556	Soybean	cytosol	8.38	28.23
KRH14574	Soybean	plastid	23.44	25.78
KRH29211	Soybean	cytosol	21.31	25.73
KRH50360	Soybean	cytosol, extracellular, plastid	19.89	25.18
KRH02112	Soybean	extracellular, mitochondrion	19.18	24.91
KRH34922	Soybean	cytosol	15.77	24.18
KRH17313	Soybean	mitochondrion	16.34	24.11
KRH44246	Soybean	cytosol	17.05	24.05
KRH51875	Soybean	cytosol	19.32	23.94
KRH72966	Soybean	mitochondrion	20.45	23.41
KRG99196	Soybean	cytosol	17.47	23.3
KRH24548	Soybean	mitochondrion	20.03	22.63
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	14.91	22.63
KRH16451	Soybean	plastid	21.59	22.13
KRH18049	Soybean	plastid	21.45	21.98
KRH54581	Soybean	mitochondrion	16.48	21.8
KRH56553	Soybean	plastid	19.18	21.57
KRH42458	Soybean	plastid	22.02	20.64
KRH45820	Soybean	cytosol, mitochondrion, plastid	21.73	20.62
KRH13392	Soybean	cytosol	17.05	20.44
KRH20741	Soybean	cytosol	17.05	20.44
KRH40170	Soybean	mitochondrion	20.03	20.35
KRG90304	Soybean	cytosol	15.34	19.25
KRH58559	Soybean	plastid	15.48	18.6
KRH29553	Soybean	mitochondrion	10.8	17.35
KRG93154	Soybean	plastid	18.47	13.61

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02004631	EnsemblPlantsGene:GLYMA_07G177500	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7L2F5	EnsemblPlants:KRH49758	ProteinID:KRH49758	ProteinID:KRH49758.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029509AC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:33511829..33518770

Molecular Weight (calculated)

79015.3 Da

IEP (calculated)

8.234

GRAVY (calculated)

-0.030

Length

704 amino acids

Sequence
(BLAST)

001: MPPSKTLASL FLHSSQFPIQ PTPPPQAHTL VQNFFTPHYK CLTLHILIRF KLYRIAHSLV ADLTSTLPDP TDVALFHHLR DSFHLCSSNS SSAVFNLVIK
101: SLTRLSLVPN ALTILHLANC HGFTPTILSY NAVLDVHRTI IASTTPNEWD LEKGLGFMRK MEKEGISPNV VTYNTLIDAS CKKKKVKEAM ALLRVMAVRG
201: VTANLISYNS MINGLCGEGR MGEAGEFVEE MREKWLVPDE VTYNTLVNGF CRKGNLHQGF VLLSEMVGKG LSPNVVTYTT LINYMCKVGY LNRAVEIFHQ
301: IRGSGLRPNE RTYSTLIDGF CHKGLMNEAY KVLSEMIVSG FSPSVVTYNT LVCGYCFLGK VEEAVGILRG MVERGLPLDV VTTSCAYSTA IAGFCREREL
401: GKAFQMKKEM VEEGFLPDVV AYSSLGQPIP CVQMLYNKRL TVSLPISLNK KNGRRILSSR EEYYNEDHVR ILIDFASVWS RISFERAFDN EVLLESLSFL
501: INAYCVAGES SKALHLHDEM MQRGFLLDNV TYSVLINGLN KKSRTKVVKR LLLKLFYEES VPDDVTYNTL IENCSNNEFK SMEGLVKGFY MKGLMNEVDR
601: PNASIYNLMI HGHGRSGNVH KAYNLYMELE HYALARERMN DELSQVLLNI LRSCKLNDAK VAKVLLEVNF KEGNMDSFLS VLTKMVKDGL LPDGGIHSSV
701: PTST

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.