CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90304	Soybean	cytosol	49.63	84.49
KRH33556	Soybean	cytosol	16.44	75.12
VIT_08s0040g01530.t01	Wine grape	cytosol	32.15	49.52
GSMUA_Achr11P...	Banana	cytosol	24.4	47.45
Bra022891.1-P	Field mustard	plastid	30.47	47.39
CDX84733	Canola	plastid	30.47	47.39
HORVU2Hr1G019920.1	Barley	cytosol	18.53	47.33
CDX79463	Canola	plastid	30.16	46.68
AT2G32630.1	Thale cress	mitochondrion, plastid	30.16	46.15
EER99880	Sorghum	cytosol	22.3	44.56
PGSC0003DMT400027103	Potato	cytosol	18.53	43.28
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	24.08	42.83
TraesCS2A01G114800.1	Wheat	plastid	23.98	42.57
TraesCS2B01G133900.1	Wheat	plastid	23.87	42.38
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	23.66	42.09
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	22.93	42.03
Os07t0671200-00	Rice	extracellular	23.87	41.38
Solyc10g084080.1.1	Tomato	cytosol, extracellular	21.57	40.16
HORVU2Hr1G019880.2	Barley	cytosol	14.97	39.72
TraesCS2D01G115600.1	Wheat	cytosol, plastid	23.87	38.97
KRH29211	Soybean	cytosol	16.34	26.76
PGSC0003DMT400027113	Potato	cytosol, plastid	27.75	26.24
KRG99196	Soybean	cytosol	14.35	25.95
PGSC0003DMT400027098	Potato	cytosol	16.75	25.89
KRH54581	Soybean	mitochondrion	14.03	25.19
KRH17313	Soybean	mitochondrion	12.25	24.53
KRH14574	Soybean	plastid	16.02	23.91
KRH45820	Soybean	cytosol, mitochondrion, plastid	18.53	23.85
KRH24548	Soybean	mitochondrion	15.5	23.76
KRH16451	Soybean	plastid	16.96	23.58
KRH72966	Soybean	mitochondrion	15.18	23.58
KRH34922	Soybean	cytosol	11.31	23.53
KRH18049	Soybean	plastid	16.86	23.44
KRH29553	Soybean	mitochondrion	10.58	23.06
KRH02112	Soybean	extracellular, mitochondrion	12.88	22.69
KRH50360	Soybean	cytosol, extracellular, plastid	13.19	22.66
KRH51875	Soybean	cytosol	13.3	22.36
KRH42458	Soybean	plastid	17.38	22.1
Solyc10g084090.1.1	Tomato	cytosol	30.37	21.69
KRH58559	Soybean	plastid	13.3	21.67
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	10.37	21.34
KRH13392	Soybean	cytosol	13.09	21.29
KRH20741	Soybean	cytosol	12.77	20.78
KRH40170	Soybean	mitochondrion	14.87	20.49
KRG89236	Soybean	plastid	16.65	20.44
KRH56553	Soybean	plastid	13.09	19.97
KRH44246	Soybean	cytosol	10.37	19.84
KRH49758	Soybean	plastid	13.61	18.47

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0EPR9	EMBL:ACUP02011537	EnsemblPlantsGene:GLYMA_19G000100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRG93154	ProteinID:KRG93154	ProteinID:KRG93154.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006EE0F64	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:4309..8135

Molecular Weight (calculated)

107543.0 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.215

Length

955 amino acids

Sequence
(BLAST)

001: MCSHSQKTLS RILSKFTSFP PPTPQHLQLA HTITLTLLNN PYSKLHPSLI PCISPHVTYR VLSDPTLPPL SCLTFFNFLP SPDLNARLIL LYRLFAARRF
101: AAMRTLLDSL VTTEIETKRP VSDVVSLVDE CDFEPHFVET LCDMLFRVCA DNRMFRDALK VFDYVMEKGL VVEGRSCFIL LLALKKCNKV ELCVRFFRRM
201: VESGRVDIGV QSLTIVVDVL CRRGEVGRAK ELMNEMATRG VDREGVDEIL GLMEREGVVA SLVTYTILIE WYASSGRIGE AEKVYEEMCE RNVEMDVYVY
301: TSMISWNCRA GNVRRASALF DEMICRGIVP NTHTFGTLIS GVCKAGQMEA AEILLEEMQC KGVDLNVVIF NTMMDGYCKR GMMDEAFRLQ DIMERKGFEA
401: DVFTYSILAS GLCKLHRYEE AKRVLNVMVE KGVAPNVVTC ATFIEIYCKE GNLAEAERFL RNMEKRGVVP NIVTYNTLID AYSKNEKVKR AHMLKAEMVE
501: KGLLPDVFTY TSLIHGECIV DKVDEALKLF NEMLVKGIRG NVKTYTAIIS GLSKEGRADE AFKLYDEMMR MGLIPDDRVF EALVGSLHKP SSHAAVKENE
601: YGELKINTSD TSSLPNTGFN VKYKSYDEID EEKRWWKIPF VLDFLKIKGF DSAFRKVIGS DTVQAGQFVE YAFGQLKSFN NSYLLKGQQS DINNDKYDTE
701: GSRELSESVS IFNMPSNEAG SQEASREDCI EQRNSNEFHK QDNDTENGHA SESSSNQFFW RNFANVVNSS IPQKLGLSVP EKFKWDGLEF LNKIGSQSQN
801: IAESIYVQSG LAIPGGTDDT NDKTSSQPAI AAFQSSVPEV KKATQNLMRQ TESILGGLML LTATVSKIKD EGLCSEERII KEDSAKARGN DIQYSTSQMF
901: PSSQNGLVLD DKKTEEMKEL FSTAESAMEA WAMLATSLGQ PSFIKSEFEK IMVLR

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.