CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027800_P001	Maize	mitochondrion	92.59	61.63
TraesCS4B01G280500.1	Wheat	plastid	80.09	58.94
TraesCS4A01G023000.1	Wheat	plastid	79.63	58.6
TraesCS4D01G279000.1	Wheat	mitochondrion	79.4	52.85
HORVU4Hr1G074200.9	Barley	mitochondrion	79.17	50.15
PGSC0003DMT400024895	Potato	cytosol	52.78	49.78
Os03t0165100-00	Rice	cytosol, mitochondrion	79.4	47.12
GSMUA_AchrUn_...	Banana	mitochondrion	52.55	39.48
VIT_06s0009g03510.t01	Wine grape	mitochondrion	54.86	38.92
KRH14574	Soybean	plastid	50.69	34.22
PGSC0003DMT400003372	Potato	mitochondrion	50.93	30.14
OQU90004	Sorghum	cytosol	31.94	29.05
Bra005695.1-P	Field mustard	mitochondrion	48.38	28.21
CDY11211	Canola	mitochondrion	48.38	28.21
OQU81794	Sorghum	mitochondrion, peroxisome	26.16	28.04
OQU75844	Sorghum	cytosol	34.95	27.4
AT5G01110.2	Thale cress	cytosol, plastid	47.45	27.08
CDX80791	Canola	mitochondrion	36.81	26.46
KXG31660	Sorghum	mitochondrion	19.21	24.27
OQU87837	Sorghum	plastid	21.53	22.68
EER99880	Sorghum	cytosol	24.77	22.38
EER96725	Sorghum	mitochondrion, plastid	28.47	19.31
EES09272	Sorghum	plastid	30.09	17.88
OQU78719	Sorghum	cytosol	30.79	17.41
KXG39937	Sorghum	cytosol, plastid	31.48	17.13
EES10956	Sorghum	mitochondrion	23.84	16.78
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	23.15	16.67
KXG22891	Sorghum	mitochondrion	17.36	12.82
OQU83816	Sorghum	mitochondrion	12.96	12.61
EES00885	Sorghum	cytosol, mitochondrion	16.44	12.39

Protein Annotations

EnsemblPlants:KXG40115	EnsemblPlantsGene:SORBI_3001G494200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF648
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:KXG40115	ProteinID:KXG40115.1	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI00081ACFAD	UniProt:A0A1B6QQC8	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr1:+:76327980..76331503

Molecular Weight (calculated)

48685.1 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.220

Length

432 amino acids

Sequence
(BLAST)

001: MANKGLKPGI VTFNSVLKGL CKHRRFDKAK EVFRAMDQCS VAPDVRSFNI LIGGFCRVGE VEEAMKFYKE MQQRGVTPDV VSFSCLIGLF STRGKMDHAA
101: AYLREMKGLG LVPDGVIYTM VIGGFCRAGS MSEALRVRDE MVGLGCLPDV VTYNTLLNGL CKQHRLLDAE ELLNEMKERG VTPDLCTFTT LIHGYCRDGN
201: FEKALQLFDT LLHQRLRPDV VAYNSLIDGM CRKGDLAKAN ELWDDMHARE IFPNHVTYSI LIDSHCEKGQ VEEAFGFLDE MVSKGNLPNI MTYNSIIKGY
301: CRSGNVKKGQ QFLQKMMQDN ILPDLITFNT LIHGYIKEEN MHGAFNVFNI MEKEMVQPDA VTYNMIINGF SEQGNMEEAG RVFKKMGASG IEPDRYTYMS
401: LINGHVTAGN SKEAFQLHDE MMHRGFAPDD KF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.