CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028107_P001	Maize	nucleus	80.98	90.06
TraesCS4A01G045400.1	Wheat	plastid	75.82	80.37
TraesCS4D01G259600.1	Wheat	cytosol	79.85	80.35
Os03t0201400-02	Rice	cytosol	80.48	80.28
HORVU4Hr1G070310.1	Barley	plastid	79.97	75.96
GSMUA_Achr1P22450_001	Banana	mitochondrion	42.07	59.64
VIT_13s0019g03690.t01	Wine grape	cytosol	31.74	51.64
KRH34922	Soybean	cytosol	28.72	49.67
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	35.77	46.48
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	35.77	46.48
Solyc01g111470.2.1	Tomato	plastid	40.68	43.41
Bra002000.1-P	Field mustard	cytosol	16.5	43.23
CDY31404	Canola	cytosol	37.15	39.81
AT2G16880.1	Thale cress	cytosol	37.15	39.7
CDX71311	Canola	cytosol	34.51	39.2
OQU81794	Sorghum	mitochondrion, peroxisome	16.88	33.25
KXG40115	Sorghum	cytosol	17.13	31.48
KXG31660	Sorghum	mitochondrion	13.1	30.41
OQU75844	Sorghum	cytosol	20.53	29.58
OQU87837	Sorghum	plastid	14.48	28.05
OQU90004	Sorghum	cytosol	16.62	27.79
EER99880	Sorghum	cytosol	16.5	27.41
EES10956	Sorghum	mitochondrion	20.53	26.55
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	20.03	26.5
EES09272	Sorghum	plastid	23.93	26.13
OQU78719	Sorghum	cytosol	22.8	23.69
OQU83816	Sorghum	mitochondrion	12.97	23.2
EER96725	Sorghum	mitochondrion, plastid	17.51	21.82
KXG22891	Sorghum	mitochondrion	15.74	21.37
EES00885	Sorghum	cytosol, mitochondrion	14.99	20.77

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8054235	UniProt:C5WTT9	ProteinID:EER95319.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KXG39937	ProteinID:KXG39937	ProteinID:KXG39937.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3001G466500	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A82D93	RefSeq:XP_002468321.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:73993346..73997417

Molecular Weight (calculated)

87473.8 Da

IEP (calculated)

7.701

GRAVY (calculated)

-0.162

Length

794 amino acids

Sequence
(BLAST)

001: MDTTPFTSAS VSPAAASGPA PDPESALVSA VADALVSASR QPSPPPMDTL LAPYLPRLSP SHHPQVIALA AANPALASPH TLLSYRRLVS PPSCLPSLLP
101: LLPMLPYRNL LPLLLDFVPL DPLRHLHRHL LASLPTSALA DAALSAYARL RLPHLAAQLL HSFRRRGHVR PSLQAANAVL SALARSPSTS PQASLDVFRS
201: LIALRLHPNH YTFNLLVHTH CSKGTLADAL STLSTMQGFG LSPDVVTYNT LLKAHCRKGM LGEARTLLAR MKKEGIAPTR ATYNTLVSAY ARLGWIKQAT
301: NVVEAMTAFG FEPDLWTYNV LAAGLCQAGK VDEAFKLKDE MEHLSIVSPD VVTYNTLVDA CFKYQRSSDA LNLLEEMRDK GVKSSLVTHN IVVKGLCREG
401: QLEEALGRLK MMTEEGLAPD VITYNTLIDA YCKARNVAKA FVLMDEMVRS GLKMDTFTLN TLLYNLCKEK RYEEAEELLR SPPQRGFVPD EVSYGTVMAA
501: YFKENKPEPA LYLWDEMSKR KLTPSIYTYN TLIKGLCTIG KLTEAIDKLN ELMKKGLVPD DTTYNIIIHA YCKEGDLEKA FQFHNKMLEN YFKPDVVTCN
601: TLMNGLCLHG KLEKAIKLFE SWAEKGKKVD VITYNTLIQA LCKDGDVDTA LHFFADMEAR GLQPDAFTYN VVLSALSEAG RSEEAQNMLH KLDESGKLSE
701: RFSYPLIKSS AEEVKTGKDP EVKSDCESGG NAKGGDQESY NKSVKELCVG GQLKEAKAVL DEMMQKGMSV DSSTYITLME GLIKRQKRQT HAAG

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.