CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31404	Canola	cytosol	95.71	90.28
AT2G16880.1	Thale cress	cytosol	83.26	78.33
VIT_13s0019g03690.t01	Wine grape	cytosol	33.62	48.16
Solyc01g111470.2.1	Tomato	plastid	50.21	47.18
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	40.77	46.64
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	40.77	46.64
KRH34922	Soybean	cytosol	28.61	43.57
GSMUA_Achr1P22450_001	Banana	mitochondrion	32.33	40.36
TraesCS4A01G045400.1	Wheat	plastid	38.63	36.05
KXG39937	Sorghum	cytosol, plastid	39.2	34.51
TraesCS4D01G259600.1	Wheat	cytosol	38.77	34.35
Os03t0201400-02	Rice	cytosol	38.63	33.92
Zm00001d028107_P001	Maize	nucleus	33.48	32.77
HORVU4Hr1G070310.1	Barley	plastid	38.77	32.42
CDX78962	Canola	cytosol	17.88	25.25
CDY51888	Canola	cytosol, mitochondrion, plastid	17.74	25.1
CDY36644	Canola	mitochondrion	22.32	24.64
CDX71231	Canola	mitochondrion	22.17	24.56
CDY17611	Canola	cytosol	19.89	23.44
CDY30265	Canola	mitochondrion	24.32	23.29
CDX86757	Canola	endoplasmic reticulum, extracellular	18.88	22.96
CDX74435	Canola	mitochondrion	24.32	22.82
CDY49798	Canola	mitochondrion	21.17	22.8
CDY57780	Canola	endoplasmic reticulum	18.6	22.61
CDY04754	Canola	cytosol	7.58	21.9
CDY10136	Canola	cytosol	11.44	21.86
CDY17453	Canola	mitochondrion	14.16	21.57
CDY21405	Canola	cytosol	12.88	21.28
CDY47261	Canola	plastid	22.17	21.26
CDX93473	Canola	mitochondrion	18.45	21.08
CDY04100	Canola	plastid	13.73	20.91
CDY67116	Canola	cytosol	17.74	20.91
CDX94941	Canola	cytosol, plastid	18.31	20.81
CDX74507	Canola	cytosol	17.6	20.74
CDY03072	Canola	mitochondrion	21.75	20.65
CDX94298	Canola	mitochondrion	16.6	20.39
CDY11211	Canola	mitochondrion	21.6	20.38
CDX94295	Canola	cytosol	5.15	20.34
CDX87212	Canola	plastid	18.31	19.97
CDX94959	Canola	mitochondrion	17.31	19.9
CDX93490	Canola	mitochondrion	17.02	19.83
CDY50117	Canola	plastid	17.6	19.74
CDX84733	Canola	plastid	17.31	19.71
CDX80791	Canola	mitochondrion	16.74	19.47
CDX79463	Canola	plastid	17.02	19.29
CDY42586	Canola	plastid	16.88	19.03
CDY04764	Canola	cytosol	9.59	18.93
CDY04753	Canola	mitochondrion, plastid	11.16	18.75
CDY39141	Canola	mitochondrion	17.45	17.63
CDX82665	Canola	mitochondrion, plastid	17.17	17.32
CDX89313	Canola	mitochondrion	19.6	10.13

Protein Annotations

EnsemblPlants:CDX71311	EnsemblPlantsGene:GSBRNA2T00144958001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF993
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX71311	ProteinID:CDX71311.1
SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EE5312	MapMan:35.1	:

Description

BnaC07g05900D

Coordinates

chrLK031792:-:2881723..2883939

Molecular Weight (calculated)

78547.4 Da

IEP (calculated)

6.300

GRAVY (calculated)

-0.223

Length

699 amino acids

Sequence
(BLAST)

001: MKPRESQLLK TLSSILTSEK THILETLNPY IPQITQPLLL SLFSSPSLAK RPETLLFLFH WAKTSTPDAF PSDSPLPLLS VVRSLISHHK FADAKSLLVS
101: HIQTSSDGPL SLSNSLLHPN LHLSPPPSKA LLDVSLGAYL QAGKPHVALQ IFQKMVRLKL KPNPLTCNTL LIGLVRYPSS FSLANARQVF DDMVKLGVSL
201: NAKTFNVLIH GYCLEGKLEE AVGMVERMVS EFSVQPDNVT YNTILKAMSK KGRLNDVKEL LLDMNKNGLV PNKDTYNNLV YGYCKLGSLK EAFQIVELMK
301: QTNMLPDLRT YNMLMNGLCN EGSIKEALEL VDEMKGLKLL PDVVTYNTLI DGCFELGRSL EAKKLMEQMV NLGVKPNQVT HNISLKWLCK EEKMEEMMRE
401: MGQKGIKMNT ITLNTILDAL CKERKLVEAH NLLDSARKRG YIVDEVSYGT LITGYFREEK VEKALEMWEE MKKIKIIPTV STFNSLIGGL CHNGKTELAM
501: EKFDELAESG LLPDDTTFNS IILGYCKEGR VEKAFEFYNE SVRHSFKTDS YTCNILLNGL CKEGMTEKAL NFFNSLIEER EVDTVTYNTM ISGFCKDRKV
601: KEAFDLLSEM EEKKLEPDRF TYNSIVTALM EDGKLSEAEE LLEKVSVKFG SAKQSLQGEA HENAESKEEV NNTEGIAYSD VINELCSRGR SKGVTIDVT

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.