CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025578.1-P	Field mustard	plastid	92.46	92.46
CDY42586	Canola	plastid	91.97	92.42
AT5G40400.2	Thale cress	cytosol	77.85	71.22
VIT_17s0000g03060.t01	Wine grape	plastid	53.77	50.76
KRH56553	Soybean	plastid	48.8	48.56
Solyc03g007390.2.1	Tomato	plastid	49.12	48.19
PGSC0003DMT400023499	Potato	plastid	47.99	47.54
CDY36644	Canola	mitochondrion	24.72	24.33
CDX71231	Canola	mitochondrion	24.4	24.09
CDX93473	Canola	mitochondrion	23.6	24.02
CDX94941	Canola	cytosol, plastid	23.43	23.74
CDX74507	Canola	cytosol	21.99	23.1
CDY67116	Canola	cytosol	21.99	23.1
CDY04753	Canola	mitochondrion, plastid	14.77	22.12
CDX94298	Canola	mitochondrion	19.58	21.44
CDX93490	Canola	mitochondrion	20.55	21.33
CDY49798	Canola	mitochondrion	21.51	20.65
CDX94959	Canola	mitochondrion	20.06	20.56
CDX84733	Canola	plastid	19.9	20.2
CDY30265	Canola	mitochondrion	23.6	20.14
CDY11211	Canola	mitochondrion	23.76	19.97
CDX79463	Canola	plastid	19.74	19.94
CDY17611	Canola	cytosol	18.94	19.9
CDY39141	Canola	mitochondrion	21.67	19.51
CDX74435	Canola	mitochondrion	23.27	19.46
CDX87212	Canola	plastid	19.9	19.34
CDY03072	Canola	mitochondrion	22.79	19.29
CDY47261	Canola	plastid	22.47	19.2
CDX82665	Canola	mitochondrion, plastid	21.19	19.05
CDY57780	Canola	endoplasmic reticulum	17.5	18.96
CDX86757	Canola	endoplasmic reticulum, extracellular	17.18	18.61
CDY51888	Canola	cytosol, mitochondrion, plastid	14.13	17.81
CDY31404	Canola	cytosol	21.03	17.68
CDX71311	Canola	cytosol	19.74	17.6
CDX78962	Canola	cytosol	13.96	17.58
CDX80791	Canola	mitochondrion	15.89	16.47
CDX94295	Canola	cytosol	4.65	16.38
CDY21405	Canola	cytosol	10.75	15.84
CDY17453	Canola	mitochondrion	10.27	13.94
CDY04100	Canola	plastid	10.27	13.94
CDY10136	Canola	cytosol	7.87	13.39
CDY04764	Canola	cytosol	7.06	12.43
CDY04754	Canola	cytosol	3.69	9.5
CDX89313	Canola	mitochondrion	19.74	9.09
Os03t0201200-01	Rice	nucleus	2.41	6.44

Protein Annotations

EnsemblPlants:CDY50117	EnsemblPlantsGene:GSBRNA2T00095928001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF657
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY50117	ProteinID:CDY50117.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EF1AA1	UniProt:A0A078IJN3	MapMan:35.1	:

Description

BnaC04g32520DBnaC04g32520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJN3]

Coordinates

chrLK032882:+:31827..33744

Molecular Weight (calculated)

70920.2 Da

IEP (calculated)

6.797

GRAVY (calculated)

0.014

Length

623 amino acids

Sequence
(BLAST)

001: MKRVSAINAA SLLKRDFSNH RFFSSSSSSS SSLQLIPRCD DPPKPITLNP LYNLLPNTLN PNRIVDVICS SLNQHDSLSS NLRNSVKSLI PHLSHREISR
101: VLLRFQSDAT RALAFFNWVK SDLGKTPIVG NYCLLLHVLA WSKKFPLAMQ FLCELIESVA NEEEEEDVFS VLVSATDECN WDPVVFDMLV KAYLKLGLVE
201: EGFSAFRKVI AFGFLVSVVT CNHLLNGLLK LDLADDCWQV YSVMCRVGIH PNAHTFNILT NAFCKGSSFN QVNDFLEKME EEEGFEPDLV TYNTLVSSYC
301: RRGRLKEAFY LYKIMYRRRV VPDLVTYTSL IKGLCKEGRV REAHQTFHRM VDRGIKPDCV AYNTLVYAYC KEGMMEQAKR LLHEMLGNIV VPDTFTCKII
401: VEGFVREGRL LAAVNFFVEL TRLRVRIPFE VCSFLIESLC REGKPFAAKH LLERITEEEG HKATPETYNS LIESFSRCDA IDEALLLKEK LTSQNQVLDV
501: NSYRALIGCL CRIGRNREAE SLMVEMVDSD VKPDCFICGA LVTGYCMELD FAKAESLLAF FAMEFRIFDI ESYNLLVKAV CETRSGYKKV LELQERMQRV
601: GFVPNTLSCK YMIQGLSQLD GLM

Best Arabidopsis Sequence Match ( AT5G40400.2 )
(BLAST)

001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.