CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17611	Canola	cytosol	77.04	95.62
AT2G02150.1	Thale cress	mitochondrion, plastid	83.42	80.68
VIT_01s0010g01780.t01	Wine grape	cytosol	44.97	59.53
KRH42458	Soybean	plastid	54.21	53.13
KRH58559	Soybean	plastid	41.03	51.54
GSMUA_Achr1P06500_001	Banana	cytosol	34.65	50.0
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	49.73	48.22
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	49.46	47.83
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	49.46	47.83
Os06t0565000-00	Rice	mitochondrion	37.36	39.63
TraesCS7A01G360200.1	Wheat	mitochondrion	37.5	39.43
Zm00001d023302_P001	Maize	mitochondrion	37.23	39.14
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	36.28	38.64
TraesCS7D01G362900.1	Wheat	mitochondrion	32.47	38.61
TraesCS7B01G267600.1	Wheat	mitochondrion	31.93	37.3
KXG22891	Sorghum	mitochondrion	25.68	32.31
CDY10136	Canola	cytosol	15.76	31.69
CDY47261	Canola	plastid	27.85	28.12
CDY51888	Canola	cytosol, mitochondrion, plastid	18.75	27.94
CDX78962	Canola	cytosol	18.61	27.68
CDY04100	Canola	plastid	16.85	27.02
CDY17453	Canola	mitochondrion	16.71	26.8
CDX94941	Canola	cytosol, plastid	22.15	26.5
CDX93473	Canola	mitochondrion	22.01	26.47
CDY30265	Canola	mitochondrion	25.68	25.89
CDX74435	Canola	mitochondrion	25.82	25.5
CDY36644	Canola	mitochondrion	21.88	25.43
CDX93490	Canola	mitochondrion	20.65	25.33
CDX87212	Canola	plastid	22.01	25.27
CDX86757	Canola	endoplasmic reticulum, extracellular	19.7	25.22
CDY57780	Canola	endoplasmic reticulum	19.57	25.04
CDX71231	Canola	mitochondrion	21.47	25.04
CDX94959	Canola	mitochondrion	20.65	25.0
CDY11211	Canola	mitochondrion	24.59	24.43
CDX94298	Canola	mitochondrion	18.75	24.25
CDY49798	Canola	mitochondrion	21.33	24.19
CDX74507	Canola	cytosol	19.29	23.95
CDX79463	Canola	plastid	19.84	23.66
CDX84733	Canola	plastid	19.7	23.62
CDY67116	Canola	cytosol	19.02	23.61
CDX94295	Canola	cytosol	5.57	23.16
CDX82665	Canola	mitochondrion, plastid	21.6	22.94
CDY39141	Canola	mitochondrion	21.47	22.83
CDY50117	Canola	plastid	19.29	22.79
CDY42586	Canola	plastid	19.16	22.74
CDY21405	Canola	cytosol	13.04	22.7
CDY04753	Canola	mitochondrion, plastid	12.5	22.12
CDY31404	Canola	cytosol	22.15	22.0
CDY04764	Canola	cytosol	10.46	21.75
CDX71311	Canola	cytosol	20.65	21.75
CDX80791	Canola	mitochondrion	17.53	21.46
CDY04754	Canola	cytosol	6.66	20.25
CDX89313	Canola	mitochondrion	22.42	12.2

Protein Annotations

EnsemblPlants:CDY03072	EnsemblPlantsGene:GSBRNA2T00115412001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF329
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY03072	ProteinID:CDY03072.1
SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EDBF67	MapMan:35.1	:

Description

BnaC07g21550D

Coordinates

chrLK031939:+:781630..783840

Molecular Weight (calculated)

83275.6 Da

IEP (calculated)

5.728

GRAVY (calculated)

0.023

Length

736 amino acids

Sequence
(BLAST)

001: MLCSLRNFIH VNRRFPRHVR PCFPLSSPSQ QSSSISCPFV WFTSFLCVIR YPFVTKTHPL DSNRDWIRNV VKNDLWEDPQ INNLFDPVHV PRLLLDLRED
101: PRLALKFFKW STKFNHSVES YSIVAHILFC SRMYHDANSI LREMVTLHSC DVFDALWSTR NVCVPGFGVF DALFSVLIDL DMVDEALQCF SKMKRFRVFP
201: KTRSCNGLLQ RFAKLGKRDG MKSFFKDMIG AGSKPSVFTY NIMIDCMFKE GDVEAARGLF EEMKFRGLVP DTVTYNSMID GYGKVGLLDD AVCVFEEMKS
301: MSCEADVITF NSLINCFCKT GVLPKGLGFY REMKRSGVKP NVVTYSTLVD GFCKEGMMLQ AVKFYVDMRR VGLVPNEFTY TSLIDAKCKI GNLTDAFRLG
401: DEMLEAGVEW NVVTYTALID GLCDAERMQE AEELFNKMVA AGVVPNLASY NALIHGFVKV KNMERALELL NELKRRGIKP DLLLYGTFIW GLCGVEKIEA
501: AKLVMKEMQE DGIKVNTLIY TTLMDAYFKS GNPTEGLHLL EEMLKLDIDV TVVTFCVLID GLCKNKLVSK AIDYFGRMSE EFGLQANAAV YTAMIDGLCK
601: ENQVDAATSL FEQMAQEGLV PDRTAYTSLM DGNLKQGNVL EALALRDKMD EIGIKLDLLA YTSLVWGLSQ CNQLQKARSF LEEMIGEGIV PDEVLCVSVL
701: KKHYELGCVE EAVELQGYLM KHQLLTSDKN NALPDM

Best Arabidopsis Sequence Match ( AT2G02150.2 )
(BLAST)

001: MFCSLRNFLH VNRRFPRHVS PSSSSLSQIQ SPLCFPLSSP SPSQSSFISC PFVWFTSFLC IIRYPFVTKS GTSTYSEDFD RDWIRKVVHN DLWDDPGLEK
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At2g02150 [Source:UniProtKB/Swiss-Prot;Acc:P0C894]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.