Factsheet for Zm00001d023302_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22891	Sorghum	mitochondrion	65.71	78.63
TraesCS7A01G360200.1	Wheat	mitochondrion	76.57	76.57
Os06t0565000-00	Rice	mitochondrion	75.86	76.51
TraesCS7D01G362900.1	Wheat	mitochondrion	65.57	74.15
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	71.29	72.21
TraesCS7B01G267600.1	Wheat	mitochondrion	64.71	71.9
GSMUA_Achr1P06500_001	Banana	cytosol	41.43	56.86
VIT_01s0010g01780.t01	Wine grape	cytosol	38.86	48.92
CDY17611	Canola	cytosol	36.14	42.66
KRH42458	Soybean	plastid	40.29	37.55
CDY03072	Canola	mitochondrion	39.14	37.23
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	39.86	36.66
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	39.86	36.66
Bra024831.1-P	Field mustard	mitochondrion	38.29	36.61
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	39.43	36.36
KRH58559	Soybean	plastid	30.14	36.01
AT2G02150.1	Thale cress	mitochondrion, plastid	38.57	35.48
Zm00001d039548_P001	Maize	mitochondrion	22.0	33.92
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	20.86	30.17
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	20.86	30.17
Zm00001d000093_P001	Maize	cytosol	22.43	29.68
Zm00001d003294_P001	Maize	plastid	22.0	29.39
Zm00001d042911_P001	Maize	mitochondrion, plastid	17.0	29.02
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	21.43	28.79
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	22.0	28.68
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	22.0	28.68
Zm00001d010121_P001	Maize	plastid	26.86	27.21
Zm00001d045319_P001	Maize	plastid	26.86	27.21
Zm00001d027800_P001	Maize	mitochondrion	24.86	26.81
Zm00001d052540_P001	Maize	plastid	26.57	25.8
Zm00001d006478_P001	Maize	mitochondrion	27.43	25.77
Zm00001d020436_P001	Maize	mitochondrion	22.57	24.88
Zm00001d044707_P001	Maize	plastid	25.0	24.58
Zm00001d023422_P001	Maize	plastid	24.14	23.6
Zm00001d018528_P001	Maize	cytosol	19.0	22.89
Zm00001d009391_P001	Maize	cytosol	18.43	22.51
Zm00001d048880_P001	Maize	mitochondrion	21.57	22.34
Zm00001d028107_P001	Maize	nucleus	22.29	21.85
Zm00001d030479_P001	Maize	plastid	15.29	21.23

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6IRJ3	ProteinID:AQK38883.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF329	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0008459D78	EnsemblPlantsGene:Zm00001d023302	EnsemblPlants:Zm00001d023302_P001	EnsemblPlants:Zm00001d023302_T001	SEG:seg

Description

Putative pentatricopeptide repeat-containing protein

Coordinates

chr10:+:2427920..2430022

Molecular Weight (calculated)

77155.7 Da

IEP (calculated)

8.081

GRAVY (calculated)

0.103

Length

700 amino acids

Sequence
(BLAST)

001: MLSLPLRRRR RLLRFCARRN PTFLRLSIAA SAAALSTAPT VASAVVTPIS DRLRVLRSLH AVAPDHLLSH PLPSSAHICL AAHLAARARL FAHSRRLLSR
101: LLGAGHRPHL AASLVDILHR AALALGPHRS ALPSVFDTLL SLLADHGLLD DAVRALARVR QLRVPPNTRT CNHILLRLAR NRQGGLVRRL FEHLPAPNVF
201: TFNIVIDFLC KQGELVEARA LFVRMKAMGC SPDVVTYNSL IDGYGKCGEL EEVELLVSEM RKSGCAADVV TYNALINCFS KFGWIEKAYS YFGEMKRLGV
301: MANVVTLSTF VDAFCKEGLV REAMKLFAQM RVRGMMPNEF TYTSLVDGTC KAGRLDDAIV LLDEMVHQGL VPNVVTYTVM VDGLCKEGKV AVADDVLSLM
401: ERAGVKANEL LYTTLIHGHF MNKNSERALD LLNEMKNKGM ELDVSLYGTL IWGLCKVQKL DEAKSLLHKM DDCGLRPNTV IYTTIMDAFF KAGKESEAVA
501: LLHKIPDSGL QPNVVTYCAL IDGLCKAGSI YEAISHFDKM RELGLDPNVQ VYTTLIDGFC KIGSLSKAVH LMNEMVDKGM SLDKVVYTSL IDGHMKQGDL
601: QGAFALKAKM IETGLQLDLY CYTCFISGFC NMNMMQEARG VLSEMIGTGI TPDKTAYNCL IRKYQKLGNM EEASSLQNEM ESVLSSCTEE DTASGSGCET

Best Arabidopsis Sequence Match ( AT2G02150.2 )
(BLAST)

001: MFCSLRNFLH VNRRFPRHVS PSSSSLSQIQ SPLCFPLSSP SPSQSSFISC PFVWFTSFLC IIRYPFVTKS GTSTYSEDFD RDWIRKVVHN DLWDDPGLEK
101: LFDLTLAPIW VPRVLVELKE DPKLAFKFFK WSMTRNGFKH SVESYCIVAH ILFCARMYYD ANSVLKEMVL SKADCDVFDV LWSTRNVCVP GFGVFDALFS
201: VLIDLGMLEE AIQCFSKMKR FRVFPKTRSC NGLLHRFAKL GKTDDVKRFF KDMIGAGARP TVFTYNIMID CMCKEGDVEA ARGLFEEMKF RGLVPDTVTY
301: NSMIDGFGKV GRLDDTVCFF EEMKDMCCEP DVITYNALIN CFCKFGKLPI GLEFYREMKG NGLKPNVVSY STLVDAFCKE GMMQQAIKFY VDMRRVGLVP
401: NEYTYTSLID ANCKIGNLSD AFRLGNEMLQ VGVEWNVVTY TALIDGLCDA ERMKEAEELF GKMDTAGVIP NLASYNALIH GFVKAKNMDR ALELLNELKG
501: RGIKPDLLLY GTFIWGLCSL EKIEAAKVVM NEMKECGIKA NSLIYTTLMD AYFKSGNPTE GLHLLDEMKE LDIEVTVVTF CVLIDGLCKN KLVSKAVDYF
601: NRISNDFGLQ ANAAIFTAMI DGLCKDNQVE AATTLFEQMV QKGLVPDRTA YTSLMDGNFK QGNVLEALAL RDKMAEIGMK LDLLAYTSLV WGLSHCNQLQ
701: KARSFLEEMI GEGIHPDEVL CISVLKKHYE LGCIDEAVEL QSYLMKHQLL TSDNDNALPN M

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At2g02150 [Source:UniProtKB/Swiss-Prot;Acc:P0C894]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.