Factsheet for Zm00001d006478_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90004	Sorghum	cytosol	56.11	88.0
Os07t0513200-01	Rice	mitochondrion	77.58	76.66
TraesCS2D01G229300.1	Wheat	mitochondrion	75.97	75.87
TraesCS2B01G273600.1	Wheat	plastid	75.97	75.87
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	75.3	72.95
HORVU2Hr1G046710.2	Barley	cytosol, plastid	75.17	72.35
CDY10136	Canola	cytosol	24.7	50.27
KRG99196	Soybean	cytosol	34.9	49.24
GSMUA_Achr8P04810_001	Banana	mitochondrion	46.31	47.46
Bra015447.1-P	Field mustard	cytosol	27.52	47.02
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	44.56	44.38
KRH45820	Soybean	cytosol, mitochondrion, plastid	44.03	44.2
PGSC0003DMT400058276	Potato	mitochondrion	40.94	40.56
CDY47261	Canola	plastid	38.26	39.09
AT1G05670.3	Thale cress	mitochondrion	38.79	39.0
Zm00001d045319_P001	Maize	plastid	26.85	28.94
Zm00001d010121_P001	Maize	plastid	26.71	28.8
Zm00001d042911_P001	Maize	mitochondrion, plastid	15.84	28.78
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	18.66	28.72
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	18.66	28.72
Zm00001d027800_P001	Maize	mitochondrion	24.97	28.66
Zm00001d039548_P001	Maize	mitochondrion	17.32	28.41
Zm00001d003294_P001	Maize	plastid	19.87	28.24
Zm00001d023302_P001	Maize	mitochondrion	25.77	27.43
Zm00001d000093_P001	Maize	cytosol	18.93	26.65
Zm00001d020436_P001	Maize	mitochondrion	22.42	26.3
Zm00001d052540_P001	Maize	plastid	24.56	25.38
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	18.12	25.14
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	17.99	24.95
Zm00001d018528_P001	Maize	cytosol	19.33	24.78
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	17.32	24.76
Zm00001d030479_P001	Maize	plastid	16.64	24.6
Zm00001d048880_P001	Maize	mitochondrion	22.15	24.41
Zm00001d044707_P001	Maize	plastid	23.09	24.16
Zm00001d023422_P001	Maize	plastid	22.68	23.6
Zm00001d028107_P001	Maize	nucleus	21.88	22.83
Zm00001d009391_P001	Maize	cytosol	17.45	22.69

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100502344	MapMan:35.1	UniProt:A0A1D6EWY0	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005794	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM24000.1	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF949	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002216C76	EnsemblPlantsGene:Zm00001d006478	EnsemblPlants:Zm00001d006478_P001	EnsemblPlants:Zm00001d006478_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr2:+:209558257..209560494

Molecular Weight (calculated)

82641.1 Da

IEP (calculated)

7.662

GRAVY (calculated)

-0.152

Length

745 amino acids

Sequence
(BLAST)

001: MLLRRTAAAA AAAAKRSTSL TPERALRHVG AAGRGHATTS SSTPRRRGHR RAPTAESDPL TSTAAPRPFS DYHPPRPDSP DDDALARRLA AAVLASPHPT
101: SLPPLPFLPL LRPVHLLLGL PLLASHPHLT GLLLPLLLLF PSRPQQHPHP HLLRCFAVAA HLAVLRGGGG AARAILSRAV RFPSPHRHFV EHYISTYKTF
201: SSDPASFDFL LLCLPSAPLL RRLRQYGISP SPEACNAVLS RLPLDEAIEL FQELPHKNVC SYNILLKALC DAGRVKDARQ LFDEMASAPD VVTYGILIHG
301: HCALGELENA VKLLDEMVAG GVEPNATVYT SVVALLCDKG WISDALRVVE DMVQRKVILD EALYTTVLSG FCNKGDLVSA RRWFDEMQRK GLATDGVTYT
401: TMINGLCRAV ELEEAEKLLQ EMWARRLDVD EVTYTVLIDG YCKRGKMAEA FQMHNAMVQR GVTPNVVTYT ALTDGLCKQG DVQAANELLH EMSNKGLELN
501: ACTYNSLING LCKAGYLEQA MRTMADMDTA CLKPDVYTYT TLIDALCKSG DLDRAHSLLQ EMLDKGIKPT IVTYNVLMNG FCMSGRVEGG KKLLDWMLEK
601: NIHPNAATYN SLMKQYCIEN NMKSTTEIYK GMRSRDVGPN ENTYNILIKG HCKARNMKEA LYFHDEMIQK GFRLTATSYS ALIRLLNKKK KFVEARELFH
701: DMRKEGLTAE SDVYDFYIDL NFNEDNLEST LALCDELVEA SIVKS

Best Arabidopsis Sequence Match ( AT1G05670.3 )
(BLAST)

001: MKKPFTGLLM KRGTLSSFRN FIQLFSLQSR GLSFSTLTDT RPFPDYSPKK ASVRDTEFVH QITNVIKLRR AEPLRRSLKP YECKFKTDHL IWVLMKIKCD
101: YRLVLDFFDW ARSRRDSNLE SLCIVIHLAV ASKDLKVAQS LISSFWERPK LNVTDSFVQF FDLLVYTYKD WGSDPRVFDV FFQVLVDFGL LREARRVFEK
201: MLNYGLVLSV DSCNVYLTRL SKDCYKTATA IIVFREFPEV GVCWNVASYN IVIHFVCQLG RIKEAHHLLL LMELKGYTPD VISYSTVVNG YCRFGELDKV
301: WKLIEVMKRK GLKPNSYIYG SIIGLLCRIC KLAEAEEAFS EMIRQGILPD TVVYTTLIDG FCKRGDIRAA SKFFYEMHSR DITPDVLTYT AIISGFCQIG
401: DMVEAGKLFH EMFCKGLEPD SVTFTELING YCKAGHMKDA FRVHNHMIQA GCSPNVVTYT TLIDGLCKEG DLDSANELLH EMWKIGLQPN IFTYNSIVNG
501: LCKSGNIEEA VKLVGEFEAA GLNADTVTYT TLMDAYCKSG EMDKAQEILK EMLGKGLQPT IVTFNVLMNG FCLHGMLEDG EKLLNWMLAK GIAPNATTFN
601: SLVKQYCIRN NLKAATAIYK DMCSRGVGPD GKTYENLVKG HCKARNMKEA WFLFQEMKGK GFSVSVSTYS VLIKGFLKRK KFLEAREVFD QMRREGLAAD
701: KEIFDFFSDT KYKGKRPDTI VDPIDEIIEN YLVDEQLRGA N

Arabidopsis Description

Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A068FPW3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.