Factsheet for Zm00001d048880_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83816	Sorghum	mitochondrion	56.66	86.26
Os11t0607100-01	Rice	mitochondrion	76.18	76.75
TraesCS7B01G036200.1	Wheat	mitochondrion	74.7	75.6
TraesCS7D01G134400.2	Wheat	mitochondrion	74.56	75.22
TraesCS7A01G134800.1	Wheat	mitochondrion	74.7	75.15
HORVU7Hr1G028150.1	Barley	mitochondrion	54.44	72.87
Bra013432.1-P	Field mustard	cytosol	39.5	53.94
CDX78962	Canola	cytosol	39.5	53.94
CDY51888	Canola	cytosol, mitochondrion, plastid	39.2	53.64
GSMUA_Achr1P12220_001	Banana	mitochondrion	53.99	52.44
VIT_01s0011g01910.t01	Wine grape	mitochondrion	50.74	48.45
KRH40170	Soybean	mitochondrion	48.52	47.33
AT4G19890.1	Thale cress	plastid	46.15	44.51
PGSC0003DMT400026741	Potato	mitochondrion	46.3	43.72
Solyc02g068890.2.1	Tomato	mitochondrion	46.15	43.58
Zm00001d042911_P001	Maize	mitochondrion, plastid	18.34	30.24
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	21.01	27.26
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	21.45	27.0
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	21.3	26.82
Zm00001d000093_P001	Maize	cytosol	20.86	26.65
Zm00001d039548_P001	Maize	mitochondrion	17.16	25.55
Zm00001d003294_P001	Maize	plastid	19.67	25.38
Zm00001d045319_P001	Maize	plastid	25.89	25.33
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	18.05	25.21
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	18.05	25.21
Zm00001d010121_P001	Maize	plastid	25.15	24.6
Zm00001d018528_P001	Maize	cytosol	19.67	22.89
Zm00001d030479_P001	Maize	plastid	16.86	22.62
Zm00001d052540_P001	Maize	plastid	23.96	22.47
Zm00001d027800_P001	Maize	mitochondrion	21.45	22.34
Zm00001d006478_P001	Maize	mitochondrion	24.41	22.15
Zm00001d044707_P001	Maize	plastid	23.08	21.91
Zm00001d023302_P001	Maize	mitochondrion	22.34	21.57
Zm00001d009391_P001	Maize	cytosol	18.05	21.29
Zm00001d023422_P001	Maize	plastid	22.34	21.09
Zm00001d020436_P001	Maize	mitochondrion	19.67	20.94
Zm00001d028107_P001	Maize	nucleus	20.86	19.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:AQK49138.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7TUV3	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000220D3A4	EnsemblPlantsGene:Zm00001d048880	EnsemblPlants:Zm00001d048880_P001	EnsemblPlants:Zm00001d048880_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr4:-:6914207..6916237

Molecular Weight (calculated)

75257.8 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.060

Length

676 amino acids

Sequence
(BLAST)

001: MLPRHGHVCR LLLLPRLRPM STSATTAFPP TDSAPFFSAA PGSFLDPTAL APDDAIALLP SVADSEGSAA ALALFRRLSS RPDMRRLMRL YATAATAFVA
101: RGNLPMAHEA ARAMVAAFAE AGRLREAADM LLELRSHGLP LVVETANWVL RVGLRHPGCF AHAREAFDGM ARAAGGVRPD HRSFRALVLG CCREGRFEEA
201: DALLAAMWAQ GFCLDSATCT VVVRAFCRQG RFRNVTDLFR RMSEMGTPPN MVNYSAWIDG LCERGYVKQA FHVLEEMVGK GLKPNVYTHT SLIDGLCKIG
301: WMERAFRLFL KLVKSSSYKP NVHTYTVMIG GYCKEGKLAR AEMLLGRMVE QGLAPNTNTY TTLIHGHCKG GSFDRAFELM NKMKLEGFLP NIYTYNAIIG
401: GFCKKGKIQE AYKVLRMATS QGLHLDKVTY TILITEHCKQ GHITCALDLF KQMAEKSCHP DIHTYTTIIA MYCQQRQMEQ SQQLFDKCLS IGLVPTKQTY
501: TSMIAGYCRL GKLTSALKVF ERMVQHGCLP DSITYGALIS SLCKESRLEE ARALFETMLD KHLVPCDVTR VTLAYEYCRR DKITIAVSFL DRLDKRQQAH
601: TADALVRKLS TVGNLDAASL FLKNVLDKHY AVDHATYTSF INSCYESNRY ALASEISEKI SKRISGFKKK DTAVIA

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.