Factsheet for Os11t0607100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G036200.1	Wheat	mitochondrion	78.54	78.89
TraesCS7A01G134800.1	Wheat	mitochondrion	78.99	78.87
TraesCS7D01G134400.2	Wheat	mitochondrion	78.69	78.81
HORVU7Hr1G028150.1	Barley	mitochondrion	57.38	76.24
Zm00001d048880_P001	Maize	mitochondrion	76.75	76.18
OQU83816	Sorghum	mitochondrion	49.18	74.32
Bra013432.1-P	Field mustard	cytosol	40.09	54.34
CDX78962	Canola	cytosol	40.09	54.34
CDY51888	Canola	cytosol, mitochondrion, plastid	39.79	54.05
GSMUA_Achr1P12220_001	Banana	mitochondrion	55.14	53.16
VIT_01s0011g01910.t01	Wine grape	mitochondrion	50.52	47.88
KRH40170	Soybean	mitochondrion	49.18	47.62
AT4G19890.1	Thale cress	plastid	47.54	45.51
Solyc02g068890.2.1	Tomato	mitochondrion	46.5	43.58
PGSC0003DMT400026741	Potato	mitochondrion	46.5	43.58
Os05t0583950-00	Rice	mitochondrion	19.08	31.22
Os04t0477200-01	Rice	endoplasmic reticulum	18.33	27.03
Os07t0671200-00	Rice	extracellular	20.57	25.05
Os06t0152500-00	Rice	plastid	24.29	23.49
Os02t0827900-03	Rice	plastid	18.93	21.9
Os07t0513200-01	Rice	mitochondrion	24.59	21.88
Os06t0565000-00	Rice	mitochondrion	22.5	21.76
Os10t0484300-01	Rice	mitochondrion	18.03	20.93
Os03t0201400-02	Rice	cytosol	24.59	20.73
Os12t0152600-01	Rice	plastid	21.76	20.39
Os09t0417500-01	Rice	mitochondrion	18.78	20.39
Os10t0363500-00	Rice	endoplasmic reticulum	15.35	20.12
Os04t0463300-01	Rice	cytosol	2.09	20.0
Os03t0165100-00	Rice	cytosol, mitochondrion	21.46	19.78
Os01t0546700-00	Rice	cytosol	17.14	19.3
Os03t0201200-01	Rice	nucleus	1.49	4.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4350893	ProteinID:ABA94684.1	ProteinID:BAF28618.1	ProteinID:BAT14806.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os11g0607100	EnsemblPlants:Os11t0607100-01	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325	InterPro:Pentatricopeptide_repeat
UniProt:Q2R1F4	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000681EC9	RefSeq:XP_015617145.1
RefSeq:XP_015617146.1	RefSeq:XP_015617147.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os11t0607100-01)

Coordinates

chr11:+:23427261..23429925

Molecular Weight (calculated)

75034.5 Da

IEP (calculated)

9.019

GRAVY (calculated)

-0.108

Length

671 amino acids

Sequence
(BLAST)

001: MLARRCHGLL LRRRRRLLPN LPPLSTAAIS TPSPPPPPDA TLDGAAPGDP GALAPDDAIA SLPTVADSAG SAAALALFRR LASRPDLRRL MRLYVTAATA
101: FVARGSLPMA HEVMRGMVAA FGEAGRLPEA ADMVLEMRSH GLPLCVETAN WVLRVGLETG SFVYARKVFD GMTRAGVCPD ERSFRALVVV CCREGKVEEV
201: DALLAAMWRY GFSLDNATCT VVVRSLCEKG RFKDVSEFFR RMLETGTPPN VVNYTAWIDG LCKRRYVKQA FHVLEEMVGR GLKPNVYTHT TLIDGLCKIG
301: WTERAFRLFL KLIKSSSYKP NVHTYTVMIG GYCREGKLAR AEMLLVRMVE QGLKPNTNTY TTLIGGHCKG GSFDRAFELM NKMKQEGFLP NIYTYNAVID
401: GFCKKGKIQE AYKVLRMATS QGLKFDKITY TILITEHCKQ GHITYALDLF DRMVENGCCP DIEAYTSLIS TYCQQRQMEE SQKFFDKCLM IGLLPTKQTY
501: TSMIAGYCKV GRSTLALRVF ERMVQNGCFA DSITYGALIS GLCKESRLEE AKALYEGMLD KRLVPCEVTR VTLTFEYCRR EKTSIAVSVL DRLDKRQQVH
601: TVDVVVRKLS ALGDVDAASL FLKKVLDEDY AVDHATYTGF INSCYENNRY ALASEMSEKF SKKISSFKEK R

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.