Factsheet for Os10t0484300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 12746528

msms PMID: 12746528 doi

JL Heazlewood, KA Howell, J Whelan, AH Millar

Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G160000.1	Wheat	mitochondrion	66.44	77.42
TraesCS1D01G157200.1	Wheat	mitochondrion	75.78	76.31
HORVU1Hr1G042440.2	Barley	mitochondrion	75.26	75.92
TraesCS1B01G176600.2	Wheat	mitochondrion	76.3	75.13
KXG31660	Sorghum	mitochondrion	42.91	72.51
Zm00001d039548_P001	Maize	mitochondrion	56.4	71.81
GSMUA_Achr3P01360_001	Banana	mitochondrion	41.87	46.63
KRH29211	Soybean	cytosol	40.83	40.48
VIT_14s0060g01220.t01	Wine grape	mitochondrion	42.39	40.23
PGSC0003DMT400007278	Potato	mitochondrion	40.83	39.01
Solyc01g100450.1.1	Tomato	mitochondrion	40.48	38.68
CDX94941	Canola	cytosol, plastid	40.14	37.72
Bra019985.1-P	Field mustard	cytosol	39.79	37.58
CDX93473	Canola	mitochondrion	39.62	37.42
AT1G09820.1	Thale cress	mitochondrion, plastid	38.58	36.8
Os04t0477200-01	Rice	endoplasmic reticulum	21.8	27.69
Os05t0583950-00	Rice	mitochondrion	19.03	26.83
Os07t0671200-00	Rice	extracellular	25.26	26.5
Os06t0565000-00	Rice	mitochondrion	29.41	24.5
Os02t0827900-03	Rice	plastid	24.22	24.14
Os01t0546700-00	Rice	cytosol	23.7	22.99
Os06t0152500-00	Rice	plastid	26.99	22.48
Os09t0417500-01	Rice	mitochondrion	23.18	21.68
Os10t0363500-00	Rice	endoplasmic reticulum	19.03	21.48
Os03t0165100-00	Rice	cytosol, mitochondrion	26.12	20.74
Os12t0152600-01	Rice	plastid	25.09	20.25
Os07t0513200-01	Rice	mitochondrion	26.12	20.03
Os03t0201400-02	Rice	cytosol	25.26	18.34
Os11t0607100-01	Rice	mitochondrion	20.93	18.03
Os04t0463300-01	Rice	cytosol	2.08	17.14
Os03t0201200-01	Rice	nucleus	2.08	5.15

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4348934	ProteinID:AAM91881.1	ProteinID:AAP54334.1	ProteinID:ABB47799.1
ProteinID:BAF26802.1	ProteinID:BAT11365.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os10g0484300
EnsemblPlants:Os10t0484300-01	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF745
InterPro:Pentatricopeptide_repeat	UniProt:Q8LNU8	SignalP:SignalP-noTM	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000A2F66
RefSeq:XP_015614400.1	RefSeq:XP_015614401.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os10t0484300-01)

Coordinates

chr10:-:18297933..18300228

Molecular Weight (calculated)

62688.6 Da

IEP (calculated)

8.697

GRAVY (calculated)

0.021

Length

578 amino acids

Sequence
(BLAST)

001: MPLATLLGHL AAGRFGLVQA LTGAATAAAA HRLLHLLLRT APPPPLPDLV SLARWSRAHF RAPLPLRLHG LLLARLASKG LYPLLRSELH VLAAARLHSP
101: ASILRALPSP SASASASTPL IADMLVLALA RASQPLRAYD AFLLAGESHP RHRPSTSSVN ALLAGLVGAK RVDLAEKAFR SALRRRVSPD IYTFNTVISG
201: LCRIGQLRKA GDVAKDIKAW GLAPSVATYN SLIDGYCKKG GAGNMYHVDM LLKEMVEAGI SPTAVTFGVL INGYCKNSNT AAAVRVFEEM KQQGIAASVV
301: TYNSLISGLC SEGKVEEGVK LMEEMEDLGL SPNEITFGCV LKGFCKKGMM ADANDWIDGM TERNVEPDVV IYNILIDVYR RLGKMEDAMA VKEAMAKKGI
401: SPNVTTYNCL ITGFSRSGDW RSASGLLDEM KEKGIEADVV TYNVLIGALC CKGEVRKAVK LLDEMSEVGL EPNHLTYNTI IQGFCDKGNI KSAYEIRTRM
501: EKCRKRANVV TYNVFIKYFC QIGKMDEAND LLNEMLDKCL VPNGITYETI KEGMMEKGYT PDIRGCTVSQ ASENPASS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.