Factsheet for PGSC0003DMT400007278

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100450.1.1	Tomato	mitochondrion	97.52	97.52
KRH29211	Soybean	cytosol	54.88	56.95
VIT_14s0060g01220.t01	Wine grape	mitochondrion	56.03	55.66
AT1G09820.1	Thale cress	mitochondrion, plastid	49.09	49.01
KXG31660	Sorghum	mitochondrion	27.44	48.54
Bra019985.1-P	Field mustard	cytosol	48.59	48.04
CDX93473	Canola	mitochondrion	48.59	48.04
CDX94941	Canola	cytosol, plastid	48.76	47.97
GSMUA_Achr3P01360_001	Banana	mitochondrion	40.83	47.59
Zm00001d039548_P001	Maize	mitochondrion	35.54	47.36
TraesCS1A01G160000.1	Wheat	mitochondrion	35.87	43.75
HORVU1Hr1G042440.2	Barley	mitochondrion	39.17	41.36
TraesCS1D01G157200.1	Wheat	mitochondrion	39.01	41.12
TraesCS1B01G176600.2	Wheat	mitochondrion	39.67	40.89
Os10t0484300-01	Rice	mitochondrion	39.01	40.83
PGSC0003DMT400034430	Potato	cytosol	23.47	29.58
PGSC0003DMT400058577	Potato	plastid	26.78	28.88
PGSC0003DMT400027103	Potato	cytosol	17.36	25.67
PGSC0003DMT400066731	Potato	mitochondrion, plastid	25.79	25.24
PGSC0003DMT400015722	Potato	cytosol	21.49	24.53
PGSC0003DMT400024895	Potato	cytosol	17.85	23.58
PGSC0003DMT400058276	Potato	mitochondrion	29.09	23.4
PGSC0003DMT400023499	Potato	plastid	24.3	23.37
PGSC0003DMT400066369	Potato	mitochondrion	29.59	23.34
PGSC0003DMT400078379	Potato	cytosol	25.29	22.11
PGSC0003DMT400003372	Potato	mitochondrion	26.28	21.78
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	26.94	21.42
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	26.94	21.42
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	20.5	20.29
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	20.5	20.29
PGSC0003DMT400040701	Potato	mitochondrion	18.35	20.18
PGSC0003DMT400026741	Potato	mitochondrion	22.15	18.72
PGSC0003DMT400027098	Potato	cytosol	16.53	16.18
PGSC0003DMT400027113	Potato	cytosol, plastid	24.46	14.65
PGSC0003DMT400066275	Potato	cytosol	7.27	13.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102605609	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M0ZSQ9	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
EnsemblPlantsGene:PGSC0003DMG400002802	PGSC:PGSC0003DMG400002802	EnsemblPlants:PGSC0003DMT400007278	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF745
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002956584	RefSeq:XP_006344758.1	RefSeq:XP_006344759.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002802]

Coordinates

chr1:+:78134722..78136539

Molecular Weight (calculated)

68867.1 Da

IEP (calculated)

8.065

GRAVY (calculated)

-0.203

Length

605 amino acids

Sequence
(BLAST)

001: MSITYFRRLH YSRLPLRCLH TANSEPTSTS TPNLFSDPLF KSKVSELISN QHWSQLKDLI KPFNPTSFLE QLLDSGFDSS SILGFFRWSQ FYQVYHHPLE
101: HLCRVLVLLV NDKKYPKVRS LLHDFVKNGK TYTVSSVFHT LLTCSDNVCA NSIIVDMLVL SYVNNGKLDL ALEAFRRAGD YGFKLSVFSC KPMLKGVVKE
201: GKFEVGELVY KEMIRRRIEV DLYTFNIVIN GLCKAGKLNK ARDVMEDMKV RGIMPNEVTY NTLIDGYCKR GGDGKMYKAD ALLREMMEQG VSPNERTYNT
301: LIDGFCKDDN VGAAMKLFKE MQLQGMRLDI VTFNSLIDGL FGDGKVDEAL GLRAEMIRLG LEPNIRTYNV MINGFSKMKM FREAKELFDD VMKQGLDLNV
401: LTFNTVIDAH SKAGKMEEAV ALRELMLSKL ICPTISTYNC LLGGYYRDGN VGAAKELLEE MEEKSVMADL VTYNIRIDAM CKRGESRKAV RLLDEMSEKR
501: LVPSHVTYNI LMAGYCLEGN PKAAVTIRKR MEKEGKQPNV VTYNVLIKGF CQKDKLEEAN ALLNEMLEKG LVPNRITYDI IREEMIDKGF VPDIDGHLYK
601: DTVNC

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.