Factsheet for TraesCS1A01G160000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G157200.1	Wheat	mitochondrion	95.36	82.4
HORVU1Hr1G042440.2	Barley	mitochondrion	92.74	80.28
TraesCS1B01G176600.2	Wheat	mitochondrion	94.35	79.73
Os10t0484300-01	Rice	mitochondrion	77.42	66.44
KXG31660	Sorghum	mitochondrion	44.15	64.04
Zm00001d039548_P001	Maize	mitochondrion	57.26	62.56
GSMUA_Achr3P01360_001	Banana	mitochondrion	47.78	45.66
KRH29211	Soybean	cytosol	44.15	37.56
VIT_14s0060g01220.t01	Wine grape	mitochondrion	44.76	36.45
PGSC0003DMT400007278	Potato	mitochondrion	43.75	35.87
Solyc01g100450.1.1	Tomato	mitochondrion	43.55	35.7
Bra019985.1-P	Field mustard	cytosol	40.93	33.17
CDX94941	Canola	cytosol, plastid	40.52	32.68
CDX93473	Canola	mitochondrion	40.32	32.68
AT1G09820.1	Thale cress	mitochondrion, plastid	39.11	32.01
TraesCS3A01G359100.1	Wheat	cytosol	23.79	28.78
TraesCS2A01G114800.1	Wheat	plastid	25.81	23.79
TraesCS2A01G326700.1	Wheat	plastid	24.8	23.47
TraesCS2A01G336700.1	Wheat	cytosol	27.82	22.66
TraesCS7A01G360200.1	Wheat	mitochondrion	30.44	21.57
TraesCS4A01G023000.1	Wheat	plastid	25.2	21.29
TraesCS7A01G109000.1	Wheat	plastid	28.63	20.43
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	23.39	20.24
TraesCS6A01G371200.1	Wheat	plastid	24.19	20.1
TraesCS5A01G229600.1	Wheat	mitochondrion	23.59	18.87
TraesCS5A01G128400.1	Wheat	plastid	25.4	18.75
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	26.61	17.17
TraesCS2A01G339000.1	Wheat	cytosol	18.95	17.12
TraesCS7A01G134800.1	Wheat	mitochondrion	22.58	16.67
TraesCS4A01G045400.1	Wheat	plastid	24.8	16.42

Protein Annotations

EnsemblPlants:TraesCS1A01G160000.1	EnsemblPlantsGene:TraesCS1A01G160000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:287313664..287315907

Molecular Weight (calculated)

54597.9 Da

IEP (calculated)

9.285

GRAVY (calculated)

-0.061

Length

496 amino acids

Sequence
(BLAST)

001: MPLRTLLRHL SAGQFARLQA LTGAATAPAA HRVLHLLLRT APAPPLPHLV SLARWSRSHF RAPLPLRFHA LLLARLASHG LHPLLRSELH ALAAARLHSP
101: ASILRVSPDL LTFNIVISGL CKAGQLRKAG DVAKDIRAWG LTPSVATFNA LIDGYCKKGR VGRMYHVDAL LKEMVEAGIS PNVVTFNVLV TGYCQDSNTA
201: AAVRVFEEMK QQGIAPSMGT YNALVWGLCS EGKVEEGVKL VDEMQDLGLA PNVVTLNSVL NGFCKKGIMV DAENWVDGMA QRNIEPNVVT YNTLIDGYRR
301: LGKMKDAAAV KEAMAGKGIS PNVRTYNCLI AGFDQSGDWR SVSGLLDEMK EKGVRADIVT YNTLIGALCC KGEVRRAVKL LDEMLMVDLE PEHRTYNNII
401: NGYCEKGNIK SAYEIRTRME KGRKRANVVT YNVFIKHLCR MGKMEEANEL LNEMLEKGLV PNKVTYEIIK EGMMEKGYVP DVRGFACSEA SQNLTS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.