Factsheet for PGSC0003DMT400015805

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 4
extracellular 4
nucleus 1
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	100.0	100.0
Solyc01g111470.2.1	Tomato	plastid	93.78	77.02
VIT_13s0019g03690.t01	Wine grape	cytosol	51.55	64.55
KRH34922	Soybean	cytosol	42.55	56.64
Bra002000.1-P	Field mustard	cytosol	24.88	50.16
GSMUA_Achr1P22450_001	Banana	mitochondrion	45.17	49.29
CDX71311	Canola	cytosol	46.64	40.77
CDY31404	Canola	cytosol	49.26	40.62
AT2G16880.1	Thale cress	cytosol	46.97	38.63
TraesCS4A01G045400.1	Wheat	plastid	45.83	37.38
KXG39937	Sorghum	cytosol, plastid	46.48	35.77
TraesCS4D01G259600.1	Wheat	cytosol	45.66	35.36
Os03t0201400-02	Rice	cytosol	45.17	34.67
Zm00001d028107_P001	Maize	nucleus	40.43	34.59
HORVU4Hr1G070310.1	Barley	plastid	46.15	33.73
PGSC0003DMT400024895	Potato	cytosol	23.24	31.0
PGSC0003DMT400034430	Potato	cytosol	18.99	24.17
PGSC0003DMT400027103	Potato	cytosol	15.88	23.72
PGSC0003DMT400078379	Potato	cytosol	26.02	22.98
PGSC0003DMT400058577	Potato	plastid	20.46	22.28
PGSC0003DMT400066731	Potato	mitochondrion, plastid	22.42	22.17
PGSC0003DMT400003372	Potato	mitochondrion	26.35	22.05
PGSC0003DMT400066369	Potato	mitochondrion	26.35	20.99
PGSC0003DMT400066275	Potato	cytosol	11.13	20.92
PGSC0003DMT400007278	Potato	mitochondrion	20.29	20.5
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	25.2	20.24
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	25.2	20.24
PGSC0003DMT400058276	Potato	mitochondrion	24.06	19.55
PGSC0003DMT400026741	Potato	mitochondrion	22.59	19.27
PGSC0003DMT400023499	Potato	plastid	18.99	18.44
PGSC0003DMT400015722	Potato	cytosol	15.22	17.55
PGSC0003DMT400040701	Potato	mitochondrion	14.08	15.64
PGSC0003DMT400027098	Potato	cytosol	14.57	14.4
PGSC0003DMT400027113	Potato	cytosol, plastid	22.26	13.47

Protein Annotations

EnsemblPlants:PGSC0003DMT400015805	EnsemblPlantsGene:PGSC0003DMG401006177	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF871
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG401006177	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI000296F092	UniProt:M1A6M4	MapMan:35.1	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401006177]

Coordinates

chr1:-:87406886..87408721

Molecular Weight (calculated)

69571.5 Da

IEP (calculated)

6.221

GRAVY (calculated)

-0.284

Length

611 amino acids

Sequence
(BLAST)

001: MKRLRLCPNI ITFNTLITAL VKYPSTHSLF LCNELFNDAL KLGLCPTTIT INILIKGYCL AYKYKDANQL LDRMSEFGCV PDNVSYNTIL DGLCEKGRLN
101: EVRDLLLDMK GKGLMPNRNT YNILVHGYCK IGWLKDAAQI VELMTQNNTL PDVWTYNMLI GGLCNEGRID DAIRIRDEMV GLKLLPDVKT YNTLINGCLD
201: NKRSSEAFDL LEEMNQKGIK CNEITYNTLI KGYCKEGKMD KAREVLQKME ESGLCPDCVS YNTLISAYCK AGNLPEVLRI MKRIGEKGLK MDNFSLNTLL
301: HILCQERKLD EAYELLSVAP TRGYLVDAVS YGTLITGYFR CADTEKALKL WDEMEEREVI PTIVTYNIII GGLCKSGKTQ QAIAKLNELL EKGIVPDEIT
401: YNTIIHGYCW EGNIEKAFQF HNKMVENSFK PDVYTCNILL RGLSREGMLE KAIKLFNTWI DKGKTTDVVT YNTLITALCK DQRLDDALGL VAEMEEKNIQ
501: RDKYTHNAIV GALTDAGRLK EAEEFMTDRE RPSEQRLQMD DREHELRVDE LDSSSIAYSQ QIDELCAEGR YKDAMLIYAQ VTQRGIDLQK STYFTLIKGL
601: IKRRKSISKT G

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.