Factsheet for Os04t0477200-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 5
peroxisome 1
nucleus 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	nucleus, plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81794	Sorghum	mitochondrion, peroxisome	71.43	80.65
HORVU2Hr1G082620.1	Barley	plastid	79.12	71.15
TraesCS2D01G336100.1	Wheat	plastid	79.56	69.08
Zm00001d003294_P001	Maize	plastid	79.34	68.89
TraesCS2B01G355200.1	Wheat	plastid	79.12	68.7
TraesCS2A01G326700.1	Wheat	plastid	78.9	68.51
GSMUA_Achr8P16100_001	Banana	cytosol	36.04	60.07
VIT_12s0055g00970.t01	Wine grape	plastid	49.23	35.33
KRH24548	Soybean	mitochondrion	48.13	35.15
Solyc01g109060.2.1	Tomato	mitochondrion	46.37	34.14
PGSC0003DMT400066731	Potato	mitochondrion, plastid	45.93	33.82
Bra015229.1-P	Field mustard	mitochondrion	45.05	32.39
CDX71231	Canola	mitochondrion	44.84	32.33
CDY36644	Canola	mitochondrion	44.84	32.23
AT2G15630.1	Thale cress	mitochondrion	43.96	31.9
KRH29553	Soybean	mitochondrion	29.23	30.37
Os04t0463300-01	Rice	cytosol	4.62	30.0
Os05t0583950-00	Rice	mitochondrion	27.03	30.0
Os07t0671200-00	Rice	extracellular	27.47	22.69
Os06t0152500-00	Rice	plastid	34.51	22.62
Os02t0827900-03	Rice	plastid	27.91	21.9
Os10t0484300-01	Rice	mitochondrion	27.69	21.8
Os03t0165100-00	Rice	cytosol, mitochondrion	31.87	19.92
Os10t0363500-00	Rice	endoplasmic reticulum	21.76	19.34
Os07t0513200-01	Rice	mitochondrion	31.65	19.1
Os09t0417500-01	Rice	mitochondrion	25.93	19.09
Os06t0565000-00	Rice	mitochondrion	28.79	18.88
Os12t0152600-01	Rice	plastid	29.23	18.58
Os01t0546700-00	Rice	cytosol	24.18	18.46
Os11t0607100-01	Rice	mitochondrion	27.03	18.33
Os03t0201400-02	Rice	cytosol	31.65	18.09
Os03t0201200-01	Rice	nucleus	0.44	0.86

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0P0WBL1	ProteinID:BAS89704.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlantsGene:Os04g0477200	EnsemblPlants:Os04t0477200-01	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF918	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001C7E37A
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os04t0477200-01);Non-protein coding transcript. (Os04t0477200-02)

Coordinates

chr4:-:23882661..23885227

Molecular Weight (calculated)

50449.3 Da

IEP (calculated)

6.107

GRAVY (calculated)

-0.152

Length

455 amino acids

Sequence
(BLAST)

001: MKSLSLPIST ASLHPLLSAL PSAPAFALFA DMFRLRLPLC TTTFNIMLRH LCSAGKPARA LELLRQMPRP NAVTYNTVIA GFCSRGRVQA ALDIMREMRE
101: RGGIAPNQYT YGTVISGWCK VGRVDEAVKV FDEMLTKGEV KPEAVMYNAL IGGYCDQGKL DTALLYRDRM VERGVAMTVA TYNLLVHALF MDGRGTEAYE
201: LVEEMGGKGL APDVFTYNIL INGHCKEGNV KKALEIFENM SRRGVRATVV TYTALIYALS KKGQVQETDK LFDEAVRRGI RPDLVLYNAL INSHSTSGNI
301: DRAFEIMGEM EKKRIAPDDV TYNTLMRGLC LLGRVDEARK LIDEMTERGI QPDLVTYNTL ISGYSMKGDV KDALRIRNEM MNKGFNPTLL TYNALIQGLC
401: KNGQGDDAEN MVKEMVENGI TPDDSTYISL IEGLTTEDER AIDDERLAAA DAAKV

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.