Factsheet for Solyc06g069700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06480.t01	Wine grape	cytosol	18.61	55.15
KRH54581	Soybean	mitochondrion	28.78	43.61
AT5G61400.1	Thale cress	mitochondrion	34.12	42.05
CDX87212	Canola	plastid	33.25	41.81
Bra035931.1-P	Field mustard	mitochondrion	33.25	41.42
HORVU0Hr1G013090.3	Barley	cytosol, plastid	28.29	39.38
HORVU5Hr1G066340.2	Barley	mitochondrion	29.65	38.55
TraesCS5A01G229600.1	Wheat	mitochondrion	29.4	38.23
Os09t0417500-01	Rice	mitochondrion	28.91	37.7
Zm00001d020436_P001	Maize	mitochondrion	29.53	37.48
TraesCS5B01G228400.1	Wheat	plastid	29.78	36.92
EER96725	Sorghum	mitochondrion, plastid	29.03	36.73
TraesCS5D01G237900.1	Wheat	plastid	29.28	35.65
Solyc11g011410.1.1	Tomato	cytosol	17.0	28.54
Solyc01g109060.2.1	Tomato	mitochondrion	18.49	24.11
Solyc01g100450.1.1	Tomato	mitochondrion	17.99	23.97
Solyc10g084080.1.1	Tomato	cytosol, extracellular	15.14	23.78
Solyc04g050550.1.1	Tomato	cytosol	16.13	22.11
Solyc01g108410.1.1	Tomato	mitochondrion	20.97	22.03
Solyc05g008560.1.1	Tomato	mitochondrion	20.47	21.88
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	20.35	21.61
Solyc01g111470.2.1	Tomato	plastid	18.86	20.43
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	13.15	20.0
Solyc03g007390.2.1	Tomato	plastid	15.76	20.0
Solyc02g068890.2.1	Tomato	mitochondrion	16.38	18.44
Solyc06g010270.1.1	Tomato	mitochondrion	8.93	15.55
Solyc10g084090.1.1	Tomato	cytosol	18.61	11.22

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4C8E3
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF793	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	EnsemblPlantsGene:Solyc06g069700.2	EnsemblPlants:Solyc06g069700.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002766D22

Description

No Description!

Coordinates

chr6:+:43412123..43414809

Molecular Weight (calculated)

90114.0 Da

IEP (calculated)

8.681

GRAVY (calculated)

0.070

Length

806 amino acids

Sequence
(BLAST)

001: MEAAMSKYSS QNLKTLFSIK SPVISRTIVA LPFSTSPSSS AAILNAKNCS EAMRLYDSAI VKTDPTKDLT LHSAIIHYLT RARLYLDARC LIKRLIENLR
101: KNSNPRKVCS LVFNDLGKID SGSSCNVFGV LIIALSEMGF VDDAYWVYQK MGKLPPLHAC NALLHGYVKM GKFEFMWGMY RNMLSFGLCP SVVTYGVLID
201: ACCLKGEILK AKTLYDEMAE KGIQPNIVTY TTMIRGFCNQ NKIQEAESMF SKMWEMGVMP NLCTYNTLMD GYSKKADTGR AFQLYQNMLK HGILPNVVTF
301: GTLIDPLCKV GEVITARNLL ACMVKFGVGP NLLIYNCLID GCCNWYDMST ALEMHSEMEK FGISPDVVTY GTLIKGYCKL GKVDEAERFL LKMDAAGVVV
401: NSVIYNQLID RYCKDRNMDK ALALCSHMIE KGVQPNVVTF SVLIDGFGKI GDLEAAMGVY TEMIIKGLKP DVVAYTALID GHFKKGNTIA ALRLHKEMAE
501: AGVAPNALTF TCLVDGFLKN GMISDAINFF LKISSSGSIG VEVDCSNGVL SFPNNVTYSA LIHGLCKDGQ YFKANKFFVD LRRNGLYPDL STYAMMIQRH
601: FEARHITHVM MLKADMLKTG FMPNLVMYKI LLKGYRDMVD LSSTRKCYEE LKDLGLVCSG ASPNGKERRA TEVSNLKLLD WSITKAQVSP RITSAAKFIV
701: SNGHYLAEDM EKLDPVLKEL SEQHDCEPPG LSCFSIKFWS YNSRRKPYIL MMQLHNCKKC PGIVVSFKQI QLLFKYVQLE LILKLSARRC KLLDTSIHVS
801: LGWSSL

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.