Factsheet for Solyc11g011410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034430	Potato	cytosol	96.88	96.88
VIT_14s0006g00170.t01	Wine grape	mitochondrion	60.0	48.65
Os04t0463300-01	Rice	cytosol	7.08	48.57
KRH17313	Soybean	mitochondrion	47.71	48.01
KRH72966	Soybean	mitochondrion	57.08	44.55
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	43.96	43.59
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	43.96	43.59
CDX93490	Canola	mitochondrion	53.33	42.67
Bra020001.1-P	Field mustard	mitochondrion	53.12	42.5
AT1G09680.1	Thale cress	mitochondrion	52.5	41.52
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	52.08	41.32
CDX94959	Canola	mitochondrion	52.29	41.28
TraesCS2B01G345200.1	Wheat	mitochondrion	45.21	35.63
TraesCS2A01G336700.1	Wheat	cytosol	44.79	35.3
TraesCS2D01G326200.1	Wheat	mitochondrion	44.58	35.14
HORVU2Hr1G080860.1	Barley	plastid	44.38	33.7
EES10956	Sorghum	mitochondrion	42.71	33.39
Solyc10g084080.1.1	Tomato	cytosol, extracellular	26.04	24.37
Solyc01g100450.1.1	Tomato	mitochondrion	29.79	23.64
Solyc04g050550.1.1	Tomato	cytosol	27.92	22.79
Solyc01g109060.2.1	Tomato	mitochondrion	29.17	22.65
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	24.58	22.26
Solyc01g108410.1.1	Tomato	mitochondrion	32.29	20.21
Solyc03g007390.2.1	Tomato	plastid	25.83	19.53
Solyc05g008560.1.1	Tomato	mitochondrion	29.58	18.83
Solyc02g068890.2.1	Tomato	mitochondrion	26.67	17.88
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	27.92	17.65
Solyc01g111470.2.1	Tomato	plastid	26.67	17.2
Solyc06g069700.2.1	Tomato	plastid	28.54	17.0
Solyc06g010270.1.1	Tomato	mitochondrion	13.33	13.82
Solyc10g084090.1.1	Tomato	cytosol	28.96	10.4

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4D5U6	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF923	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc11g011410.1	EnsemblPlants:Solyc11g011410.1.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002769AB7	:	:	:	:

Description

No Description!

Coordinates

chr11:+:4479440..4480882

Molecular Weight (calculated)

54126.3 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.115

Length

480 amino acids

Sequence
(BLAST)

001: MYPQGHSFIN TIVSRKGKDS AFTVFQAFLK AKGTNFTSFV NVLNGLIDVY LDLGFVSDAI QCFRLIQKNK IKFPFQSCTK VLEYLMKLNS PMVAFDFYKE
101: LLEYGYPANV YFFNVLMSKL CKEGKMMEAR SVFTEMWKRN LRPSVVSFNT LINGYCRLGD MDAGYRLKKE MEERGISPDV YTYSALINGL CKKFWMSDAN
201: ELFSEMCVKS LVPNVVIFTT LINGHCKGGS VALAMDTYQQ MLKQGVEPDL ITYNTLVNGL CKSGDLGEAT KLIHVMVEKG LKPDKITYTT VIDGCCKEGD
301: LDGAFEIKKV MVDNKIELDD VAYTALITGL CRQGRTVDAE RILTEMLNIG LKPDDPIYTV VIDGFCKKGD MKMGFKLLRQ MRSNGHAPNV ITYNVLLNGL
401: CRQGQMRNAE MLLQAMLNLG LNPDDITYNI LLEGHCKHGN PDEYDKLRGE MGLVHDYATY TSLVGSLSRT SKRQPKKSFM

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.