CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX73773
CDX77962
CDX90305
CDX90677
CDY12116
CDY22394
CDY28989
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42260.1	CDX73773	AT3G50910.1	21798944
AT2G42260.1	CDX77962	AT3G50910.1	21798944
AT2G42260.1	CDX90677	AT3G50910.1	21798944
AT2G42260.1	CDY28989	AT3G50910.1	21798944
AT2G42260.1	CDY67893	AT3G50910.1	21798944
AT2G42260.1	CDX72718	AT4G39050.1	21798944
AT2G42260.1	CDX90305	AT4G39050.1	21798944
AT2G42260.1	CDY12116	AT4G39050.1	21798944
AT2G42260.1	CDY22394	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004677.1-P	Field mustard	nucleus	98.65	98.65
CDY53501	Canola	nucleus	91.48	91.07
AT2G42260.1	Thale cress	cytosol	79.82	68.73
CDY22476	Canola	cytosol	19.28	55.13
CDY06071	Canola	cytosol	58.74	52.61
KRH67023	Soybean	nucleus	44.39	46.05
VIT_08s0007g07790.t01	Wine grape	nucleus	54.71	45.86
CDX71989	Canola	plastid	59.19	43.42
Solyc10g080400.1.1	Tomato	nucleus	44.84	43.29
CDX98240	Canola	mitochondrion	28.7	42.38
PGSC0003DMT400060963	Potato	nucleus	48.43	42.35
KRG95339	Soybean	mitochondrion, plastid	40.36	40.91
CDY08664	Canola	cytosol	22.42	37.04

Protein Annotations

MapMan:13.3.4.1.5	EnsemblPlants:CDX79885	ProteinID:CDX79885	ProteinID:CDX79885.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0051783	GO:GO:1904667	EnsemblPlantsGene:GSBRNA2T00132737001	InterPro:POLYCHOME/GIG1
PANTHER:PTHR35119	PANTHER:PTHR35119:SF1	UniParc:UPI0004EEE020	SEG:seg	:	:

Description

BnaA05g02710D

Coordinates

chrLK031819:+:700637..701786

Molecular Weight (calculated)

25032.1 Da

IEP (calculated)

11.486

GRAVY (calculated)

-0.704

Length

223 amino acids

Sequence
(BLAST)

001: MPEARDRRER PVDYPAAFLN RRSHGILLDE SPLRSPVQRL PSSESLVFGR GGFARGNLGI RRTGGGGGRR RGRARASASV LPSWYPRTPL RDVSSVVRAI
101: ERRRARVGDV ETPTPQQLEV VLDDSLVPVS GERNYSFVTP GPSVGFKRPW PPSTAKVHQI LLDITRQSSA EEEEEALTPQ KKLLNSIDKV EKVVMEEIQK
201: MKSTPSAKRA EREKRVRTLM SMR

Best Arabidopsis Sequence Match ( AT2G42260.1 )
(BLAST)

001: MPEARDRIER QVDYPAAFLN RRSHGILLDE PATQHNLFGS PVQRVPSEAT GGLGSIGQGS MTGRGGLVRG NFGIRRTGGG RRGQIQFRSP QGRENMSLGV
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR

Arabidopsis Description

PYMProtein POLYCHOME [Source:UniProtKB/Swiss-Prot;Acc:O48533]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.