Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06071 | Canola | cytosol | 71.05 | 86.75 |
| CDY22476 | Canola | cytosol | 18.09 | 70.51 |
| AT3G57860.1 | Thale cress | cytosol | 54.61 | 68.31 |
| CDY53501 | Canola | nucleus | 45.07 | 61.16 |
| CDX79885 | Canola | nucleus | 43.42 | 59.19 |
| CDX98240 | Canola | mitochondrion | 27.3 | 54.97 |
| CDY08664 | Canola | cytosol | 21.38 | 48.15 |
| KRH67023 | Soybean | nucleus | 32.24 | 45.58 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 37.5 | 42.86 |
| KRG95339 | Soybean | mitochondrion, plastid | 29.93 | 41.36 |
| PGSC0003DMT400060963 | Potato | nucleus | 32.24 | 38.43 |
| Solyc10g080400.1.1 | Tomato | nucleus | 28.62 | 37.66 |
Protein Annotations
| EnsemblPlants:CDX71989 | EnsemblPlantsGene:GSBRNA2T00155760001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0051783 | GO:GO:1904667 | InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 | ProteinID:CDX71989 |
| ProteinID:CDX71989.1 | SEG:seg | UniParc:UPI0004EEBD82 | MapMan:13.3.4.1.5 | : | : |
Description
BnaC08g28850D
Coordinates
chrLK031795:-:1665336..1667631
Molecular Weight (calculated)
33756.5 Da
IEP (calculated)
10.512
GRAVY (calculated)
-0.598
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MTCYQRFINT QSDQPFQIYR NSLSSPRILA ASRVSSVHQS LTEDSEPPDL KMAEARDRLE KPVDYAAIFA NRRSRGVLLD DEPASRLGVF EHPVRRLPSG
101: SRVPGSLVGG NYSSWRPGHG NGSGSGQSQF RSSQGRENVP MASARRERGG ASRSLLPSWY PRTPLRDITH IMRAIERKRR AGMGVDSGLG AETPSRQQVR
201: VLETPLALAA DEPNCVMVTP APAVGLKRSC PPSTAKVHKM LLDITKEISE EEEEAGFITP EKKLLNSIDV VEKIVMAEIQ KLKSTPLAKR QEREKRVKTL
301: MSMR
101: SRVPGSLVGG NYSSWRPGHG NGSGSGQSQF RSSQGRENVP MASARRERGG ASRSLLPSWY PRTPLRDITH IMRAIERKRR AGMGVDSGLG AETPSRQQVR
201: VLETPLALAA DEPNCVMVTP APAVGLKRSC PPSTAKVHKM LLDITKEISE EEEEAGFITP EKKLLNSIDV VEKIVMAEIQ KLKSTPLAKR QEREKRVKTL
301: MSMR
001: MPEARDRTER PVDYSTIFAN RRRHGILLDE PDSRLSLIES PVNPDIGSIG GTGGLVRGNF TTWRPGNGRG GHTPFRLPQG RENMPIVTAR RGRGGGLLPS
101: WYPRTPLRDI THIVRAIERR RGAGTGGDDG RVIEIPTHRQ VGVLESPVPL SGEHKCSMVT PGPSVGFKRS CPPSTAKVQK MLLDITKEIA EEEAGFITPE
201: KKLLNSIDKV EKIVMAEIQK LKSTPQAKRE EREKRVRTLM TMR
101: WYPRTPLRDI THIVRAIERR RGAGTGGDDG RVIEIPTHRQ VGVLESPVPL SGEHKCSMVT PGPSVGFKRS CPPSTAKVQK MLLDITKEIA EEEAGFITPE
201: KKLLNSIDKV EKIVMAEIQK LKSTPQAKRE EREKRVRTLM TMR
Arabidopsis Description
GIG1Protein GIGAS CELL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.