Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007362.1-P | Field mustard | cytosol | 68.31 | 67.21 |
| CDY06071 | Canola | cytosol | 68.72 | 67.07 |
| CDY22476 | Canola | cytosol | 20.58 | 64.1 |
| AT2G42260.1 | Thale cress | cytosol | 66.67 | 62.55 |
| CDX71989 | Canola | plastid | 68.31 | 54.61 |
| CDX98240 | Canola | mitochondrion | 30.04 | 48.34 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 51.85 | 47.37 |
| KRH67023 | Soybean | nucleus | 39.51 | 44.65 |
| CDY08664 | Canola | cytosol | 24.28 | 43.7 |
| PGSC0003DMT400060963 | Potato | nucleus | 45.68 | 43.53 |
| Solyc10g080400.1.1 | Tomato | nucleus | 40.33 | 42.42 |
| KRG95339 | Soybean | mitochondrion, plastid | 36.63 | 40.45 |
Protein Annotations
| MapMan:13.3.4.1.5 | EntrezGene:824955 | UniProt:A0A178VGZ1 | ProteinID:AEE79710.1 | ArrayExpress:AT3G57860 | EnsemblPlantsGene:AT3G57860 |
| RefSeq:AT3G57860 | TAIR:AT3G57860 | RefSeq:AT3G57860-TAIR-G | EnsemblPlants:AT3G57860.1 | TAIR:AT3G57860.1 | Unigene:At.69876 |
| EMBL:BT004275 | EMBL:BT005570 | ProteinID:CAB67614.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007049 |
| GO:GO:0007088 | GO:GO:0007113 | GO:GO:0007127 | GO:GO:0007135 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009561 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009791 |
| GO:GO:0009960 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0040020 | GO:GO:0051301 |
| GO:GO:0051321 | GO:GO:0051783 | GO:GO:1900426 | GO:GO:1904667 | RefSeq:NP_191345.1 | ProteinID:OAP05116.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 | UniProt:Q9M2R1 | UniParc:UPI000000C315 |
| Symbol:UVI4-LIKE | SEG:seg | : | : | : | : |
Description
GIG1Protein GIGAS CELL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2R1]
Coordinates
chr3:+:21426285..21428340
Molecular Weight (calculated)
26996.7 Da
IEP (calculated)
10.935
GRAVY (calculated)
-0.638
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEARDRTER PVDYSTIFAN RRRHGILLDE PDSRLSLIES PVNPDIGSIG GTGGLVRGNF TTWRPGNGRG GHTPFRLPQG RENMPIVTAR RGRGGGLLPS
101: WYPRTPLRDI THIVRAIERR RGAGTGGDDG RVIEIPTHRQ VGVLESPVPL SGEHKCSMVT PGPSVGFKRS CPPSTAKVQK MLLDITKEIA EEEAGFITPE
201: KKLLNSIDKV EKIVMAEIQK LKSTPQAKRE EREKRVRTLM TMR
101: WYPRTPLRDI THIVRAIERR RGAGTGGDDG RVIEIPTHRQ VGVLESPVPL SGEHKCSMVT PGPSVGFKRS CPPSTAKVQK MLLDITKEIA EEEAGFITPE
201: KKLLNSIDKV EKIVMAEIQK LKSTPQAKRE EREKRVRTLM TMR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.