Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53501 | Canola | nucleus | 69.5 | 80.36 |
| Bra004677.1-P | Field mustard | nucleus | 69.11 | 80.27 |
| CDX79885 | Canola | nucleus | 68.73 | 79.82 |
| AT3G57860.1 | Thale cress | cytosol | 62.55 | 66.67 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 55.21 | 53.76 |
| Solyc10g080400.1.1 | Tomato | nucleus | 42.08 | 47.19 |
| KRH67023 | Soybean | nucleus | 38.61 | 46.51 |
| PGSC0003DMT400060963 | Potato | nucleus | 45.56 | 46.27 |
| KRG95339 | Soybean | mitochondrion, plastid | 35.14 | 41.36 |
Protein Annotations
| MapMan:13.3.4.1.5 | EntrezGene:818827 | ProteinID:AAB88650.1 | ProteinID:AEC10097.1 | EMBL:AK227846 | ProteinID:ANM62271.1 |
| ArrayExpress:AT2G42260 | EnsemblPlantsGene:AT2G42260 | RefSeq:AT2G42260 | TAIR:AT2G42260 | RefSeq:AT2G42260-TAIR-G | EnsemblPlants:AT2G42260.1 |
| TAIR:AT2G42260.1 | EMBL:BT005212 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006260 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007049 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009561 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009960 | GO:GO:0009987 | GO:GO:0010091 |
| GO:GO:0010224 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0030154 | GO:GO:0042023 | GO:GO:0051301 |
| GO:GO:0051783 | GO:GO:1900426 | GO:GO:1904667 | RefSeq:NP_001324441.1 | RefSeq:NP_181755.1 | UniProt:O48533 |
| PO:PO:0000025 | PO:PO:0000036 | PO:PO:0000293 | InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 |
| UniParc:UPI000000C584 | Symbol:UVI4 | SEG:seg | : | : | : |
Description
PYMProtein POLYCHOME [Source:UniProtKB/Swiss-Prot;Acc:O48533]
Coordinates
chr2:-:17601872..17603705
Molecular Weight (calculated)
28732.6 Da
IEP (calculated)
11.477
GRAVY (calculated)
-0.671
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEARDRIER QVDYPAAFLN RRSHGILLDE PATQHNLFGS PVQRVPSEAT GGLGSIGQGS MTGRGGLVRG NFGIRRTGGG RRGQIQFRSP QGRENMSLGV
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.