Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95339 | Soybean | mitochondrion, plastid | 85.12 | 83.18 |
| Bra004677.1-P | Field mustard | nucleus | 46.05 | 44.39 |
| CDX79885 | Canola | nucleus | 46.05 | 44.39 |
| CDY53501 | Canola | nucleus | 46.05 | 44.2 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 52.56 | 42.48 |
| PGSC0003DMT400060963 | Potato | nucleus | 49.3 | 41.57 |
| Solyc10g080400.1.1 | Tomato | nucleus | 44.19 | 41.13 |
| AT3G57860.1 | Thale cress | cytosol | 44.65 | 39.51 |
| AT2G42260.1 | Thale cress | cytosol | 46.51 | 38.61 |
| Bra007362.1-P | Field mustard | cytosol | 43.26 | 37.65 |
| CDY06071 | Canola | cytosol | 43.26 | 37.35 |
| CDY22476 | Canola | cytosol | 13.02 | 35.9 |
| CDX71989 | Canola | plastid | 45.58 | 32.24 |
| CDX98240 | Canola | mitochondrion | 20.47 | 29.14 |
| CDY08664 | Canola | cytosol | 15.81 | 25.19 |
Protein Annotations
| EntrezGene:100816760 | MapMan:13.3.4.1.5 | EMBL:ACUP02002024 | ncoils:Coil | EnsemblPlantsGene:GLYMA_03G141800 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0051783 | GO:GO:1904667 | UniProt:I1JNH4 |
| EnsemblPlants:KRH67023 | ProteinID:KRH67023 | ProteinID:KRH67023.1 | InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 |
| UniParc:UPI000233A196 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:35784604..35785863
Molecular Weight (calculated)
23827.5 Da
IEP (calculated)
11.451
GRAVY (calculated)
-0.772
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MPESRDRRIT VVDLAAAIAR RRASFIYIDS PPLRTPQRTA AIGRGRASGS PGSQNTPPST ARRGRGRVPS RNVLPAWYPR TPLRDITVVV QAIERRRARS
101: GEAEGQRIGS TDPASDRLVT EPSEPASADS AVKSPKSVGV KLRTPFGSKV PKIFLDISEL PEDDESETLT PQKKLLNNID QVEEAVREEL KKLKRTPSAK
201: KAEREKRVRT LMSMR
101: GEAEGQRIGS TDPASDRLVT EPSEPASADS AVKSPKSVGV KLRTPFGSKV PKIFLDISEL PEDDESETLT PQKKLLNNID QVEEAVREEL KKLKRTPSAK
201: KAEREKRVRT LMSMR
001: MPEARDRIER QVDYPAAFLN RRSHGILLDE PATQHNLFGS PVQRVPSEAT GGLGSIGQGS MTGRGGLVRG NFGIRRTGGG RRGQIQFRSP QGRENMSLGV
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
Arabidopsis Description
PYMProtein POLYCHOME [Source:UniProtKB/Swiss-Prot;Acc:O48533]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.